Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1245 and GFF1246 are separated by 7 nucleotides GFF1246 and GFF1247 are separated by 137 nucleotides GFF1247 and GFF1248 are separated by 127 nucleotides GFF1248 and GFF1249 are separated by 123 nucleotides
GFF1245 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase, at 564,316 to 566,157
GFF1245
GFF1246 - FIG001341: Probable Fe(2+)-trafficking protein YggX, at 566,165 to 566,437
GFF1246
GFF1247 - Sulfate and thiosulfate binding protein CysP, at 566,575 to 567,615
GFF1247
GFF1248 - FMN reductase (NADPH) (EC 1.5.1.38), at 567,743 to 568,327
GFF1248
GFF1249 - hypothetical protein, at 568,451 to 568,588
GFF1249
Position (kb) 566
567
568 Strain fitness (log2 ratio) -2
-1
0
1
2 at 565.844 kb on + strand, within GFF1245 at 565.845 kb on - strand, within GFF1245 at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.093 kb on - strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.244 kb on + strand, within GFF1246 at 566.244 kb on + strand, within GFF1246 at 566.244 kb on + strand, within GFF1246 at 566.244 kb on + strand, within GFF1246 at 566.245 kb on - strand, within GFF1246 at 566.245 kb on - strand, within GFF1246 at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.471 kb on - strand at 566.471 kb on - strand at 566.471 kb on - strand at 566.471 kb on - strand at 566.471 kb on - strand at 566.471 kb on - strand at 566.483 kb on + strand at 566.483 kb on + strand at 566.487 kb on + strand at 566.487 kb on + strand at 566.488 kb on - strand at 566.516 kb on + strand at 566.518 kb on - strand at 566.518 kb on - strand at 566.519 kb on + strand at 566.519 kb on + strand at 566.520 kb on - strand at 566.520 kb on - strand at 566.520 kb on - strand at 566.526 kb on + strand at 566.527 kb on - strand at 566.535 kb on + strand at 566.535 kb on + strand at 566.535 kb on + strand at 566.552 kb on - strand at 566.552 kb on - strand at 566.561 kb on + strand at 566.562 kb on - strand at 566.595 kb on + strand at 566.595 kb on + strand at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.702 kb on - strand, within GFF1247 at 566.702 kb on - strand, within GFF1247 at 566.702 kb on - strand, within GFF1247 at 566.702 kb on - strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.723 kb on - strand, within GFF1247 at 566.723 kb on - strand, within GFF1247 at 566.723 kb on - strand, within GFF1247 at 566.723 kb on - strand, within GFF1247 at 566.731 kb on + strand, within GFF1247 at 566.731 kb on + strand, within GFF1247 at 566.731 kb on + strand, within GFF1247 at 566.732 kb on - strand, within GFF1247 at 566.732 kb on - strand, within GFF1247 at 566.732 kb on - strand, within GFF1247 at 566.732 kb on - strand, within GFF1247 at 566.752 kb on + strand, within GFF1247 at 566.752 kb on + strand, within GFF1247 at 566.753 kb on - strand, within GFF1247 at 566.753 kb on - strand, within GFF1247 at 566.753 kb on - strand, within GFF1247 at 566.753 kb on - strand, within GFF1247 at 566.953 kb on + strand, within GFF1247 at 566.953 kb on + strand, within GFF1247 at 566.953 kb on + strand, within GFF1247 at 566.953 kb on + strand, within GFF1247 at 566.954 kb on - strand, within GFF1247 at 566.954 kb on - strand, within GFF1247 at 566.954 kb on - strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.086 kb on - strand, within GFF1247 at 567.086 kb on - strand, within GFF1247 at 567.118 kb on + strand, within GFF1247 at 567.118 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.375 kb on + strand, within GFF1247 at 567.397 kb on + strand, within GFF1247 at 567.397 kb on + strand, within GFF1247 at 567.397 kb on + strand, within GFF1247 at 567.398 kb on - strand, within GFF1247 at 567.398 kb on - strand, within GFF1247 at 567.398 kb on - strand, within GFF1247 at 567.406 kb on + strand, within GFF1247 at 567.406 kb on + strand, within GFF1247 at 567.406 kb on + strand, within GFF1247 at 567.406 kb on + strand, within GFF1247 at 567.406 kb on + strand, within GFF1247 at 567.407 kb on - strand, within GFF1247 at 567.407 kb on - strand, within GFF1247 at 567.407 kb on - strand, within GFF1247 at 567.407 kb on - strand, within GFF1247 at 567.407 kb on - strand, within GFF1247 at 567.412 kb on + strand, within GFF1247 at 567.412 kb on + strand, within GFF1247 at 567.412 kb on + strand, within GFF1247 at 567.413 kb on - strand, within GFF1247 at 567.413 kb on - strand, within GFF1247 at 567.452 kb on - strand, within GFF1247 at 567.452 kb on - strand, within GFF1247 at 567.484 kb on + strand, within GFF1247 at 567.484 kb on + strand, within GFF1247 at 567.485 kb on - strand, within GFF1247 at 567.485 kb on - strand, within GFF1247 at 567.485 kb on - strand, within GFF1247 at 567.595 kb on + strand at 567.595 kb on + strand at 567.596 kb on - strand at 567.596 kb on - strand at 567.971 kb on + strand, within GFF1248 at 567.971 kb on + strand, within GFF1248 at 567.971 kb on + strand, within GFF1248 at 567.972 kb on - strand, within GFF1248 at 567.972 kb on - strand, within GFF1248 at 567.972 kb on - strand, within GFF1248 at 567.983 kb on + strand, within GFF1248 at 567.983 kb on + strand, within GFF1248 at 567.983 kb on + strand, within GFF1248 at 567.984 kb on - strand, within GFF1248 at 568.098 kb on - strand, within GFF1248 at 568.098 kb on - strand, within GFF1248 at 568.154 kb on + strand, within GFF1248 at 568.154 kb on + strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.155 kb on - strand, within GFF1248 at 568.196 kb on + strand, within GFF1248 at 568.196 kb on + strand, within GFF1248 at 568.318 kb on + strand at 568.318 kb on + strand at 568.319 kb on - strand at 568.319 kb on - strand at 568.319 kb on - strand at 568.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 565,844 + GFF1245 0.83 +0.3 565,845 - GFF1245 0.83 -1.7 566,090 + +0.5 566,090 + -1.8 566,090 + -0.6 566,090 + -0.9 566,090 + +0.2 566,090 + +0.2 566,090 + -1.0 566,090 + -0.1 566,090 + -1.0 566,090 + +0.2 566,090 + -0.5 566,090 + -0.9 566,090 + -0.8 566,090 + +0.0 566,090 + +1.0 566,090 + -0.4 566,090 + -2.3 566,090 + -0.2 566,090 + -0.3 566,090 + -0.8 566,091 - -0.6 566,091 - +1.2 566,091 - +0.2 566,091 - +0.9 566,091 - -0.3 566,091 - -0.4 566,091 - +0.1 566,091 - +0.9 566,091 - -0.5 566,091 - -1.2 566,091 - +1.0 566,091 - -0.3 566,091 - +1.2 566,091 - +0.2 566,091 - -0.1 566,091 - -0.1 566,091 - -0.4 566,091 - +0.3 566,091 - -0.4 566,093 - -0.4 566,184 + -0.6 566,184 + -2.2 566,184 + -0.3 566,184 + +1.4 566,184 + -0.7 566,184 + +0.5 566,184 + -0.3 566,184 + +0.7 566,184 + -0.3 566,185 - -1.1 566,185 - -0.6 566,185 - -1.4 566,185 - -0.3 566,185 - +0.3 566,185 - -1.2 566,185 - +0.1 566,185 - +0.2 566,185 - +0.0 566,185 - -0.3 566,185 - -0.4 566,244 + GFF1246 0.29 -0.1 566,244 + GFF1246 0.29 +1.7 566,244 + GFF1246 0.29 +0.4 566,244 + GFF1246 0.29 -1.4 566,245 - GFF1246 0.29 +0.7 566,245 - GFF1246 0.29 +0.2 566,470 + -0.8 566,470 + -0.3 566,470 + +0.8 566,470 + +0.7 566,470 + +0.2 566,470 + +0.5 566,470 + -0.3 566,470 + +0.3 566,470 + +1.6 566,470 + -0.4 566,470 + -0.2 566,471 - +0.3 566,471 - -1.4 566,471 - +0.3 566,471 - +0.5 566,471 - +0.7 566,471 - -1.7 566,483 + +0.2 566,483 + +0.4 566,487 + -0.2 566,487 + -0.5 566,488 - -1.3 566,516 + -0.6 566,518 - +0.5 566,518 - +2.0 566,519 + +0.2 566,519 + -0.1 566,520 - -0.1 566,520 - -0.7 566,520 - -0.1 566,526 + +0.7 566,527 - -0.6 566,535 + -0.3 566,535 + -0.3 566,535 + -0.1 566,552 - -0.5 566,552 - +0.3 566,561 + -0.8 566,562 - +0.2 566,595 + -0.3 566,595 + +0.1 566,701 + GFF1247 0.12 -0.9 566,701 + GFF1247 0.12 +0.7 566,701 + GFF1247 0.12 +0.5 566,701 + GFF1247 0.12 +0.1 566,701 + GFF1247 0.12 -0.7 566,701 + GFF1247 0.12 -2.2 566,701 + GFF1247 0.12 -1.1 566,702 - GFF1247 0.12 -0.9 566,702 - GFF1247 0.12 +0.4 566,702 - GFF1247 0.12 -0.1 566,702 - GFF1247 0.12 +0.5 566,722 + GFF1247 0.14 -0.1 566,722 + GFF1247 0.14 +0.1 566,722 + GFF1247 0.14 -0.2 566,722 + GFF1247 0.14 -1.6 566,722 + GFF1247 0.14 +0.9 566,722 + GFF1247 0.14 -0.3 566,722 + GFF1247 0.14 +1.5 566,722 + GFF1247 0.14 -0.3 566,722 + GFF1247 0.14 +0.0 566,722 + GFF1247 0.14 -0.1 566,723 - GFF1247 0.14 -1.3 566,723 - GFF1247 0.14 +1.0 566,723 - GFF1247 0.14 -0.3 566,723 - GFF1247 0.14 +1.1 566,731 + GFF1247 0.15 +1.6 566,731 + GFF1247 0.15 -0.6 566,731 + GFF1247 0.15 -1.3 566,732 - GFF1247 0.15 +0.1 566,732 - GFF1247 0.15 +0.4 566,732 - GFF1247 0.15 +1.1 566,732 - GFF1247 0.15 -0.6 566,752 + GFF1247 0.17 +0.1 566,752 + GFF1247 0.17 -0.1 566,753 - GFF1247 0.17 +0.1 566,753 - GFF1247 0.17 -0.3 566,753 - GFF1247 0.17 +0.7 566,753 - GFF1247 0.17 +1.4 566,953 + GFF1247 0.36 -0.1 566,953 + GFF1247 0.36 -0.1 566,953 + GFF1247 0.36 -1.7 566,953 + GFF1247 0.36 -0.8 566,954 - GFF1247 0.36 -0.6 566,954 - GFF1247 0.36 -0.3 566,954 - GFF1247 0.36 +1.6 567,085 + GFF1247 0.49 +1.5 567,085 + GFF1247 0.49 +0.5 567,085 + GFF1247 0.49 +1.1 567,085 + GFF1247 0.49 +1.3 567,085 + GFF1247 0.49 -0.3 567,085 + GFF1247 0.49 +1.0 567,086 - GFF1247 0.49 -0.1 567,086 - GFF1247 0.49 -0.3 567,118 + GFF1247 0.52 +0.8 567,118 + GFF1247 0.52 +0.0 567,145 + GFF1247 0.55 -0.8 567,145 + GFF1247 0.55 +0.6 567,145 + GFF1247 0.55 -1.1 567,145 + GFF1247 0.55 +0.1 567,145 + GFF1247 0.55 +0.6 567,145 + GFF1247 0.55 -0.7 567,146 - GFF1247 0.55 +0.3 567,146 - GFF1247 0.55 +1.0 567,146 - GFF1247 0.55 -0.8 567,146 - GFF1247 0.55 +1.4 567,146 - GFF1247 0.55 -1.1 567,146 - GFF1247 0.55 +0.0 567,375 + GFF1247 0.77 -1.3 567,397 + GFF1247 0.79 -0.4 567,397 + GFF1247 0.79 -0.4 567,397 + GFF1247 0.79 +0.7 567,398 - GFF1247 0.79 +0.2 567,398 - GFF1247 0.79 -0.1 567,398 - GFF1247 0.79 -0.3 567,406 + GFF1247 0.80 -0.3 567,406 + GFF1247 0.80 +0.5 567,406 + GFF1247 0.80 +0.1 567,406 + GFF1247 0.80 +0.5 567,406 + GFF1247 0.80 +0.5 567,407 - GFF1247 0.80 -0.2 567,407 - GFF1247 0.80 +0.5 567,407 - GFF1247 0.80 -0.9 567,407 - GFF1247 0.80 -0.2 567,407 - GFF1247 0.80 -0.1 567,412 + GFF1247 0.80 +0.0 567,412 + GFF1247 0.80 -1.4 567,412 + GFF1247 0.80 -1.3 567,413 - GFF1247 0.80 -0.9 567,413 - GFF1247 0.80 +0.5 567,452 - GFF1247 0.84 -1.2 567,452 - GFF1247 0.84 -0.8 567,484 + GFF1247 0.87 +0.1 567,484 + GFF1247 0.87 -0.1 567,485 - GFF1247 0.87 +0.4 567,485 - GFF1247 0.87 +0.5 567,485 - GFF1247 0.87 +0.3 567,595 + -0.3 567,595 + -0.3 567,596 - +0.1 567,596 - +0.9 567,971 + GFF1248 0.39 +0.4 567,971 + GFF1248 0.39 -0.2 567,971 + GFF1248 0.39 +0.8 567,972 - GFF1248 0.39 +1.7 567,972 - GFF1248 0.39 +0.0 567,972 - GFF1248 0.39 -0.1 567,983 + GFF1248 0.41 +0.2 567,983 + GFF1248 0.41 -0.5 567,983 + GFF1248 0.41 +0.1 567,984 - GFF1248 0.41 +0.5 568,098 - GFF1248 0.61 +0.5 568,098 - GFF1248 0.61 -0.6 568,154 + GFF1248 0.70 +0.6 568,154 + GFF1248 0.70 -0.0 568,155 - GFF1248 0.70 -0.6 568,155 - GFF1248 0.70 -1.3 568,155 - GFF1248 0.70 -0.2 568,155 - GFF1248 0.70 -0.1 568,155 - GFF1248 0.70 +1.7 568,155 - GFF1248 0.70 +0.1 568,155 - GFF1248 0.70 -0.3 568,155 - GFF1248 0.70 +0.1 568,155 - GFF1248 0.70 +0.6 568,155 - GFF1248 0.70 -0.6 568,196 + GFF1248 0.77 -0.3 568,196 + GFF1248 0.77 +0.3 568,318 + +0.0 568,318 + -0.5 568,319 - -0.2 568,319 - -0.2 568,319 - -0.9 568,319 - +0.5
Or see this region's nucleotide sequence