Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1236 and GFF1237 are separated by 7 nucleotides GFF1237 and GFF1238 are separated by 98 nucleotides GFF1238 and GFF1239 overlap by 1 nucleotides
GFF1236 - Methionine sulfoxide reductase molybdopterin-binding subunit, at 555,047 to 555,838
GFF1236
GFF1237 - Methionine sulfoxide reductase cytochrome b subunit, at 555,846 to 556,502
GFF1237
GFF1238 - Two-component transcriptional response regulator, OmpR family, at 556,601 to 557,326
GFF1238
GFF1239 - Two-component system sensor histidine kinase, at 557,326 to 558,822
GFF1239
Position (kb) 556
557
558 Strain fitness (log2 ratio) -2
-1
0
1
2 at 556.079 kb on - strand, within GFF1237 at 556.079 kb on - strand, within GFF1237 at 556.102 kb on + strand, within GFF1237 at 556.103 kb on - strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.229 kb on - strand, within GFF1237 at 556.351 kb on + strand, within GFF1237 at 556.555 kb on + strand at 556.555 kb on + strand at 556.556 kb on - strand at 556.556 kb on - strand at 556.556 kb on - strand at 556.685 kb on + strand, within GFF1238 at 556.685 kb on + strand, within GFF1238 at 556.826 kb on + strand, within GFF1238 at 556.826 kb on + strand, within GFF1238 at 556.826 kb on + strand, within GFF1238 at 556.827 kb on - strand, within GFF1238 at 556.827 kb on - strand, within GFF1238 at 556.827 kb on - strand, within GFF1238 at 556.904 kb on + strand, within GFF1238 at 556.904 kb on + strand, within GFF1238 at 556.904 kb on + strand, within GFF1238 at 556.905 kb on - strand, within GFF1238 at 556.905 kb on - strand, within GFF1238 at 556.905 kb on - strand, within GFF1238 at 557.105 kb on + strand, within GFF1238 at 557.105 kb on + strand, within GFF1238 at 557.106 kb on - strand, within GFF1238 at 557.172 kb on - strand, within GFF1238 at 557.186 kb on + strand, within GFF1238 at 557.285 kb on + strand at 557.285 kb on + strand at 557.286 kb on - strand at 557.286 kb on - strand at 557.581 kb on + strand, within GFF1239 at 557.581 kb on + strand, within GFF1239 at 557.581 kb on + strand, within GFF1239 at 557.582 kb on - strand, within GFF1239 at 557.582 kb on - strand, within GFF1239 at 557.582 kb on - strand, within GFF1239 at 557.582 kb on - strand, within GFF1239 at 557.582 kb on - strand, within GFF1239 at 557.782 kb on + strand, within GFF1239 at 557.783 kb on - strand, within GFF1239 at 557.783 kb on - strand, within GFF1239 at 557.783 kb on - strand, within GFF1239 at 557.783 kb on - strand, within GFF1239 at 557.783 kb on - strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.789 kb on - strand, within GFF1239 at 557.789 kb on - strand, within GFF1239 at 558.190 kb on + strand, within GFF1239 at 558.247 kb on + strand, within GFF1239 at 558.326 kb on - strand, within GFF1239
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 556,079 - GFF1237 0.35 -0.1 556,079 - GFF1237 0.35 -0.5 556,102 + GFF1237 0.39 +0.2 556,103 - GFF1237 0.39 -0.5 556,228 + GFF1237 0.58 -2.1 556,228 + GFF1237 0.58 -1.3 556,228 + GFF1237 0.58 +1.1 556,228 + GFF1237 0.58 -2.1 556,228 + GFF1237 0.58 +1.7 556,228 + GFF1237 0.58 +1.1 556,229 - GFF1237 0.58 +0.0 556,351 + GFF1237 0.77 -0.1 556,555 + -0.2 556,555 + -0.5 556,556 - -0.4 556,556 - +1.7 556,556 - -0.3 556,685 + GFF1238 0.12 +0.1 556,685 + GFF1238 0.12 +0.3 556,826 + GFF1238 0.31 +0.4 556,826 + GFF1238 0.31 -0.8 556,826 + GFF1238 0.31 -0.1 556,827 - GFF1238 0.31 -0.3 556,827 - GFF1238 0.31 -0.1 556,827 - GFF1238 0.31 -0.3 556,904 + GFF1238 0.42 +0.4 556,904 + GFF1238 0.42 -0.5 556,904 + GFF1238 0.42 +0.5 556,905 - GFF1238 0.42 -0.2 556,905 - GFF1238 0.42 -1.3 556,905 - GFF1238 0.42 +0.4 557,105 + GFF1238 0.69 +0.5 557,105 + GFF1238 0.69 -0.5 557,106 - GFF1238 0.70 +0.7 557,172 - GFF1238 0.79 +1.0 557,186 + GFF1238 0.81 +2.3 557,285 + +1.4 557,285 + +0.7 557,286 - +0.9 557,286 - +0.3 557,581 + GFF1239 0.17 -0.3 557,581 + GFF1239 0.17 -0.5 557,581 + GFF1239 0.17 -0.4 557,582 - GFF1239 0.17 +0.1 557,582 - GFF1239 0.17 +0.6 557,582 - GFF1239 0.17 -0.4 557,582 - GFF1239 0.17 -0.0 557,582 - GFF1239 0.17 -0.3 557,782 + GFF1239 0.30 -1.6 557,783 - GFF1239 0.31 -0.2 557,783 - GFF1239 0.31 -2.3 557,783 - GFF1239 0.31 -0.4 557,783 - GFF1239 0.31 -0.4 557,783 - GFF1239 0.31 +0.3 557,788 + GFF1239 0.31 +0.1 557,788 + GFF1239 0.31 +0.4 557,788 + GFF1239 0.31 -0.3 557,788 + GFF1239 0.31 +0.7 557,788 + GFF1239 0.31 +1.7 557,788 + GFF1239 0.31 -0.4 557,788 + GFF1239 0.31 -0.1 557,788 + GFF1239 0.31 -0.2 557,788 + GFF1239 0.31 +0.6 557,789 - GFF1239 0.31 +1.4 557,789 - GFF1239 0.31 +0.9 558,190 + GFF1239 0.58 +1.7 558,247 + GFF1239 0.62 +0.0 558,326 - GFF1239 0.67 -1.2
Or see this region's nucleotide sequence