Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1190 and GFF1191 are separated by 927 nucleotides GFF1191 and GFF1192 are separated by 122 nucleotides GFF1192 and GFF1193 are separated by 90 nucleotides
GFF1190 - Glycine oxidase ThiO (EC 1.4.3.19), at 506,757 to 507,848
GFF1190
GFF1191 - Predicted hydroxymethylpyrimidine transporter CytX, at 508,776 to 510,110
GFF1191
GFF1192 - no description, at 510,233 to 510,406
GFF1192
GFF1193 - Adenylate cyclase (EC 4.6.1.1), at 510,497 to 512,395
GFF1193
Position (kb) 508
509
510
511 Strain fitness (log2 ratio) -2
-1
0
1
2 at 508.007 kb on + strand at 508.008 kb on - strand at 508.098 kb on - strand at 508.290 kb on - strand at 508.715 kb on + strand at 508.715 kb on + strand at 508.715 kb on + strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 508.716 kb on - strand at 509.017 kb on + strand, within GFF1191 at 509.017 kb on + strand, within GFF1191 at 509.018 kb on - strand, within GFF1191 at 509.018 kb on - strand, within GFF1191 at 509.018 kb on - strand, within GFF1191 at 509.176 kb on + strand, within GFF1191 at 509.176 kb on + strand, within GFF1191 at 509.176 kb on + strand, within GFF1191 at 509.177 kb on - strand, within GFF1191 at 509.177 kb on - strand, within GFF1191 at 509.188 kb on + strand, within GFF1191 at 509.188 kb on + strand, within GFF1191 at 509.314 kb on + strand, within GFF1191 at 509.314 kb on + strand, within GFF1191 at 509.314 kb on + strand, within GFF1191 at 509.314 kb on + strand, within GFF1191 at 509.314 kb on + strand, within GFF1191 at 509.314 kb on + strand, within GFF1191 at 509.315 kb on - strand, within GFF1191 at 509.315 kb on - strand, within GFF1191 at 509.315 kb on - strand, within GFF1191 at 509.315 kb on - strand, within GFF1191 at 509.404 kb on + strand, within GFF1191 at 509.404 kb on + strand, within GFF1191 at 509.821 kb on + strand, within GFF1191 at 509.821 kb on + strand, within GFF1191 at 509.821 kb on + strand, within GFF1191 at 509.821 kb on + strand, within GFF1191 at 509.822 kb on - strand, within GFF1191 at 509.822 kb on - strand, within GFF1191 at 509.822 kb on - strand, within GFF1191 at 509.962 kb on + strand, within GFF1191 at 509.962 kb on + strand, within GFF1191 at 509.962 kb on + strand, within GFF1191 at 509.963 kb on - strand, within GFF1191 at 510.219 kb on + strand at 510.219 kb on + strand at 510.219 kb on + strand at 510.219 kb on + strand at 510.220 kb on - strand at 510.278 kb on - strand, within GFF1192 at 510.278 kb on - strand, within GFF1192 at 510.278 kb on - strand, within GFF1192 at 510.278 kb on - strand, within GFF1192 at 510.319 kb on + strand, within GFF1192 at 510.935 kb on + strand, within GFF1193 at 510.935 kb on + strand, within GFF1193 at 510.935 kb on + strand, within GFF1193 at 510.935 kb on + strand, within GFF1193 at 510.935 kb on + strand, within GFF1193 at 510.936 kb on - strand, within GFF1193 at 510.936 kb on - strand, within GFF1193 at 510.936 kb on - strand, within GFF1193 at 510.936 kb on - strand, within GFF1193 at 511.005 kb on - strand, within GFF1193
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 508,007 + +0.5 508,008 - -2.2 508,098 - +0.1 508,290 - -0.7 508,715 + -0.1 508,715 + -0.3 508,715 + -0.2 508,716 - -0.6 508,716 - +1.4 508,716 - +1.0 508,716 - +0.9 508,716 - +0.5 508,716 - +0.2 508,716 - -0.0 508,716 - -0.2 508,716 - -0.3 509,017 + GFF1191 0.18 +0.0 509,017 + GFF1191 0.18 -0.1 509,018 - GFF1191 0.18 -0.3 509,018 - GFF1191 0.18 -1.2 509,018 - GFF1191 0.18 -0.2 509,176 + GFF1191 0.30 +0.0 509,176 + GFF1191 0.30 -1.0 509,176 + GFF1191 0.30 +1.1 509,177 - GFF1191 0.30 -0.6 509,177 - GFF1191 0.30 +0.2 509,188 + GFF1191 0.31 -0.9 509,188 + GFF1191 0.31 -0.7 509,314 + GFF1191 0.40 -2.1 509,314 + GFF1191 0.40 +1.1 509,314 + GFF1191 0.40 -1.9 509,314 + GFF1191 0.40 -1.2 509,314 + GFF1191 0.40 -0.8 509,314 + GFF1191 0.40 -0.1 509,315 - GFF1191 0.40 -0.5 509,315 - GFF1191 0.40 -0.3 509,315 - GFF1191 0.40 +0.1 509,315 - GFF1191 0.40 +0.5 509,404 + GFF1191 0.47 -0.7 509,404 + GFF1191 0.47 -0.2 509,821 + GFF1191 0.78 +0.4 509,821 + GFF1191 0.78 -0.5 509,821 + GFF1191 0.78 -0.2 509,821 + GFF1191 0.78 -0.3 509,822 - GFF1191 0.78 -0.5 509,822 - GFF1191 0.78 +2.7 509,822 - GFF1191 0.78 +0.8 509,962 + GFF1191 0.89 -0.2 509,962 + GFF1191 0.89 +0.7 509,962 + GFF1191 0.89 -0.4 509,963 - GFF1191 0.89 +0.1 510,219 + +1.9 510,219 + -0.9 510,219 + -0.2 510,219 + +0.1 510,220 - +0.5 510,278 - GFF1192 0.26 +0.1 510,278 - GFF1192 0.26 -1.3 510,278 - GFF1192 0.26 -0.8 510,278 - GFF1192 0.26 +0.0 510,319 + GFF1192 0.49 -0.1 510,935 + GFF1193 0.23 +1.3 510,935 + GFF1193 0.23 -0.4 510,935 + GFF1193 0.23 -0.1 510,935 + GFF1193 0.23 -0.5 510,935 + GFF1193 0.23 -1.1 510,936 - GFF1193 0.23 -0.6 510,936 - GFF1193 0.23 -0.6 510,936 - GFF1193 0.23 -0.3 510,936 - GFF1193 0.23 -0.1 511,005 - GFF1193 0.27 -1.0
Or see this region's nucleotide sequence