Strain Fitness in Variovorax sp. SCN45 around GFF1186

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1185 and GFF1186 are separated by 544 nucleotidesGFF1186 and GFF1187 are separated by 5 nucleotidesGFF1187 and GFF1188 overlap by 4 nucleotides GFF1185 - Transcriptional regulator, AraC family, at 501,221 to 502,084 GFF1185 GFF1186 - Ferrichrome-iron receptor, at 502,629 to 504,782 GFF1186 GFF1187 - Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3), at 504,788 to 505,729 GFF1187 GFF1188 - Thiazole synthase (EC 2.8.1.10), at 505,726 to 506,541 GFF1188 Position (kb) 502 503 504 505Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 501.820 kb on - strand, within GFF1185at 501.939 kb on + strand, within GFF1185at 501.940 kb on - strand, within GFF1185at 502.056 kb on + strandat 502.056 kb on + strandat 502.056 kb on + strandat 502.057 kb on - strandat 502.057 kb on - strandat 502.263 kb on + strandat 502.263 kb on + strandat 502.263 kb on + strandat 502.263 kb on + strandat 502.270 kb on + strandat 502.271 kb on - strandat 502.271 kb on - strandat 502.271 kb on - strandat 502.271 kb on - strandat 502.271 kb on - strandat 502.271 kb on - strandat 502.286 kb on + strandat 502.286 kb on + strandat 502.287 kb on - strandat 502.287 kb on - strandat 502.298 kb on + strandat 502.298 kb on + strandat 502.299 kb on - strandat 502.299 kb on - strandat 502.316 kb on - strandat 502.320 kb on + strandat 502.321 kb on - strandat 502.321 kb on - strandat 502.321 kb on - strandat 502.322 kb on + strandat 502.322 kb on + strandat 502.322 kb on + strandat 502.323 kb on - strandat 502.323 kb on - strandat 502.426 kb on + strandat 502.426 kb on + strandat 502.426 kb on + strandat 502.426 kb on + strandat 502.427 kb on - strandat 502.427 kb on - strandat 502.437 kb on + strandat 502.438 kb on - strandat 502.438 kb on - strandat 502.438 kb on - strandat 502.438 kb on - strandat 502.503 kb on - strandat 502.503 kb on - strandat 502.503 kb on - strandat 502.562 kb on - strandat 502.685 kb on - strandat 502.685 kb on - strandat 502.685 kb on - strandat 502.685 kb on - strandat 502.703 kb on - strandat 502.703 kb on - strandat 502.789 kb on + strandat 502.790 kb on - strandat 502.790 kb on - strandat 502.868 kb on - strand, within GFF1186at 503.114 kb on - strand, within GFF1186at 503.258 kb on - strand, within GFF1186at 503.314 kb on + strand, within GFF1186at 503.314 kb on + strand, within GFF1186at 503.314 kb on + strand, within GFF1186at 503.315 kb on - strand, within GFF1186at 503.315 kb on - strand, within GFF1186at 503.315 kb on - strand, within GFF1186at 503.315 kb on - strand, within GFF1186at 503.341 kb on + strand, within GFF1186at 503.341 kb on + strand, within GFF1186at 503.342 kb on - strand, within GFF1186at 503.342 kb on - strand, within GFF1186at 503.380 kb on + strand, within GFF1186at 503.380 kb on + strand, within GFF1186at 503.380 kb on + strand, within GFF1186at 503.380 kb on + strand, within GFF1186at 503.380 kb on + strand, within GFF1186at 503.380 kb on + strand, within GFF1186at 503.380 kb on + strand, within GFF1186at 503.380 kb on + strand, within GFF1186at 503.381 kb on - strand, within GFF1186at 503.381 kb on - strand, within GFF1186at 503.497 kb on + strand, within GFF1186at 503.590 kb on + strand, within GFF1186at 503.590 kb on + strand, within GFF1186at 503.590 kb on + strand, within GFF1186at 503.590 kb on + strand, within GFF1186at 503.590 kb on + strand, within GFF1186at 503.591 kb on - strand, within GFF1186at 503.591 kb on - strand, within GFF1186at 503.596 kb on + strand, within GFF1186at 503.596 kb on + strand, within GFF1186at 503.596 kb on + strand, within GFF1186at 503.596 kb on + strand, within GFF1186at 503.596 kb on + strand, within GFF1186at 503.597 kb on - strand, within GFF1186at 503.597 kb on - strand, within GFF1186at 503.597 kb on - strand, within GFF1186at 503.597 kb on - strand, within GFF1186at 503.597 kb on - strand, within GFF1186at 503.597 kb on - strand, within GFF1186at 503.744 kb on - strand, within GFF1186at 503.771 kb on - strand, within GFF1186at 503.779 kb on + strand, within GFF1186at 503.779 kb on + strand, within GFF1186at 503.779 kb on + strand, within GFF1186at 503.780 kb on - strand, within GFF1186at 503.780 kb on - strand, within GFF1186at 503.780 kb on - strand, within GFF1186at 503.780 kb on - strand, within GFF1186at 503.810 kb on - strand, within GFF1186at 503.873 kb on + strand, within GFF1186at 503.944 kb on - strand, within GFF1186at 504.001 kb on + strand, within GFF1186at 504.286 kb on + strand, within GFF1186at 504.286 kb on + strand, within GFF1186at 504.287 kb on - strand, within GFF1186at 504.287 kb on - strand, within GFF1186at 504.287 kb on - strand, within GFF1186at 504.287 kb on - strand, within GFF1186at 504.287 kb on - strand, within GFF1186at 504.287 kb on - strand, within GFF1186at 504.287 kb on - strand, within GFF1186at 504.362 kb on - strand, within GFF1186at 504.457 kb on + strand, within GFF1186at 504.457 kb on + strand, within GFF1186at 504.457 kb on + strand, within GFF1186at 504.457 kb on + strand, within GFF1186at 504.457 kb on + strand, within GFF1186at 504.457 kb on + strand, within GFF1186at 504.458 kb on - strand, within GFF1186at 504.467 kb on - strand, within GFF1186at 504.481 kb on + strand, within GFF1186at 504.481 kb on + strand, within GFF1186at 504.481 kb on + strand, within GFF1186at 504.481 kb on + strand, within GFF1186at 504.482 kb on - strand, within GFF1186at 504.482 kb on - strand, within GFF1186at 504.482 kb on - strand, within GFF1186at 504.482 kb on - strand, within GFF1186at 504.482 kb on - strand, within GFF1186at 504.774 kb on + strandat 504.774 kb on + strandat 504.774 kb on + strandat 504.975 kb on + strand, within GFF1187at 505.035 kb on + strand, within GFF1187at 505.037 kb on + strand, within GFF1187at 505.038 kb on - strand, within GFF1187at 505.038 kb on - strand, within GFF1187at 505.038 kb on - strand, within GFF1187at 505.038 kb on - strand, within GFF1187at 505.056 kb on + strand, within GFF1187at 505.056 kb on + strand, within GFF1187at 505.056 kb on + strand, within GFF1187at 505.057 kb on - strand, within GFF1187at 505.057 kb on - strand, within GFF1187at 505.057 kb on - strand, within GFF1187at 505.057 kb on - strand, within GFF1187at 505.057 kb on - strand, within GFF1187at 505.057 kb on - strand, within GFF1187at 505.057 kb on - strand, within GFF1187at 505.057 kb on - strand, within GFF1187at 505.096 kb on - strand, within GFF1187at 505.096 kb on - strand, within GFF1187at 505.197 kb on + strand, within GFF1187at 505.240 kb on - strand, within GFF1187at 505.392 kb on + strand, within GFF1187at 505.392 kb on + strand, within GFF1187at 505.393 kb on - strand, within GFF1187at 505.602 kb on + strand, within GFF1187at 505.602 kb on + strand, within GFF1187at 505.603 kb on - strand, within GFF1187

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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501,820 - GFF1185 0.69 -0.4
501,939 + GFF1185 0.83 -0.0
501,940 - GFF1185 0.83 -1.1
502,056 + -1.0
502,056 + +0.1
502,056 + -0.3
502,057 - -0.3
502,057 - -0.4
502,263 + -0.1
502,263 + -0.4
502,263 + +1.4
502,263 + -0.7
502,270 + +0.1
502,271 - -0.6
502,271 - -1.5
502,271 - -0.1
502,271 - -0.5
502,271 - +3.8
502,271 - +2.7
502,286 + -0.2
502,286 + -0.4
502,287 - -1.5
502,287 - +0.1
502,298 + -0.6
502,298 + -1.7
502,299 - +0.3
502,299 - -0.7
502,316 - -0.7
502,320 + -0.8
502,321 - -1.1
502,321 - -0.0
502,321 - -1.6
502,322 + -0.2
502,322 + -0.7
502,322 + +1.3
502,323 - -0.2
502,323 - -0.0
502,426 + +0.9
502,426 + -0.7
502,426 + -0.0
502,426 + -0.3
502,427 - -0.3
502,427 - -0.1
502,437 + -0.5
502,438 - -0.7
502,438 - +0.1
502,438 - -0.2
502,438 - +0.1
502,503 - -1.2
502,503 - -1.1
502,503 - +0.6
502,562 - -0.3
502,685 - -0.4
502,685 - +0.3
502,685 - -0.4
502,685 - +0.1
502,703 - -0.9
502,703 - -0.4
502,789 + -0.6
502,790 - +0.5
502,790 - +0.1
502,868 - GFF1186 0.11 +1.4
503,114 - GFF1186 0.23 -0.9
503,258 - GFF1186 0.29 +0.1
503,314 + GFF1186 0.32 +0.7
503,314 + GFF1186 0.32 +0.3
503,314 + GFF1186 0.32 +0.4
503,315 - GFF1186 0.32 -1.0
503,315 - GFF1186 0.32 -1.8
503,315 - GFF1186 0.32 -0.1
503,315 - GFF1186 0.32 -0.0
503,341 + GFF1186 0.33 -0.7
503,341 + GFF1186 0.33 -0.5
503,342 - GFF1186 0.33 -0.3
503,342 - GFF1186 0.33 -1.0
503,380 + GFF1186 0.35 -0.9
503,380 + GFF1186 0.35 +0.4
503,380 + GFF1186 0.35 +0.3
503,380 + GFF1186 0.35 -0.2
503,380 + GFF1186 0.35 -0.5
503,380 + GFF1186 0.35 +4.4
503,380 + GFF1186 0.35 +0.3
503,380 + GFF1186 0.35 -0.8
503,381 - GFF1186 0.35 -0.7
503,381 - GFF1186 0.35 -0.8
503,497 + GFF1186 0.40 -0.5
503,590 + GFF1186 0.45 -0.9
503,590 + GFF1186 0.45 +0.6
503,590 + GFF1186 0.45 -0.0
503,590 + GFF1186 0.45 +0.5
503,590 + GFF1186 0.45 -2.1
503,591 - GFF1186 0.45 +0.1
503,591 - GFF1186 0.45 -0.5
503,596 + GFF1186 0.45 -0.4
503,596 + GFF1186 0.45 -0.6
503,596 + GFF1186 0.45 -0.7
503,596 + GFF1186 0.45 -0.6
503,596 + GFF1186 0.45 +0.7
503,597 - GFF1186 0.45 -0.1
503,597 - GFF1186 0.45 +1.7
503,597 - GFF1186 0.45 +0.1
503,597 - GFF1186 0.45 -0.6
503,597 - GFF1186 0.45 -1.1
503,597 - GFF1186 0.45 +0.3
503,744 - GFF1186 0.52 -1.2
503,771 - GFF1186 0.53 -0.3
503,779 + GFF1186 0.53 -0.7
503,779 + GFF1186 0.53 -0.5
503,779 + GFF1186 0.53 -1.6
503,780 - GFF1186 0.53 +1.4
503,780 - GFF1186 0.53 -0.0
503,780 - GFF1186 0.53 -0.5
503,780 - GFF1186 0.53 +3.1
503,810 - GFF1186 0.55 +0.1
503,873 + GFF1186 0.58 +0.3
503,944 - GFF1186 0.61 -1.1
504,001 + GFF1186 0.64 -0.9
504,286 + GFF1186 0.77 +1.3
504,286 + GFF1186 0.77 -0.3
504,287 - GFF1186 0.77 -0.4
504,287 - GFF1186 0.77 -0.9
504,287 - GFF1186 0.77 +0.1
504,287 - GFF1186 0.77 +0.7
504,287 - GFF1186 0.77 -0.2
504,287 - GFF1186 0.77 -1.3
504,287 - GFF1186 0.77 -0.2
504,362 - GFF1186 0.80 +0.7
504,457 + GFF1186 0.85 -0.5
504,457 + GFF1186 0.85 +0.1
504,457 + GFF1186 0.85 -0.6
504,457 + GFF1186 0.85 +1.1
504,457 + GFF1186 0.85 -0.2
504,457 + GFF1186 0.85 -1.5
504,458 - GFF1186 0.85 -0.9
504,467 - GFF1186 0.85 -0.1
504,481 + GFF1186 0.86 +0.0
504,481 + GFF1186 0.86 +0.6
504,481 + GFF1186 0.86 -0.8
504,481 + GFF1186 0.86 -0.3
504,482 - GFF1186 0.86 +0.8
504,482 - GFF1186 0.86 +0.4
504,482 - GFF1186 0.86 -0.4
504,482 - GFF1186 0.86 -2.2
504,482 - GFF1186 0.86 -0.4
504,774 + +1.7
504,774 + -1.4
504,774 + -1.8
504,975 + GFF1187 0.20 -0.9
505,035 + GFF1187 0.26 -0.6
505,037 + GFF1187 0.26 -1.1
505,038 - GFF1187 0.27 -1.5
505,038 - GFF1187 0.27 -1.5
505,038 - GFF1187 0.27 -1.3
505,038 - GFF1187 0.27 -0.0
505,056 + GFF1187 0.28 -0.7
505,056 + GFF1187 0.28 +0.1
505,056 + GFF1187 0.28 +0.1
505,057 - GFF1187 0.29 +0.7
505,057 - GFF1187 0.29 +0.5
505,057 - GFF1187 0.29 -0.6
505,057 - GFF1187 0.29 +0.2
505,057 - GFF1187 0.29 -0.7
505,057 - GFF1187 0.29 -1.6
505,057 - GFF1187 0.29 -1.7
505,057 - GFF1187 0.29 -0.3
505,096 - GFF1187 0.33 -0.9
505,096 - GFF1187 0.33 +0.5
505,197 + GFF1187 0.43 +0.0
505,240 - GFF1187 0.48 -0.3
505,392 + GFF1187 0.64 -0.5
505,392 + GFF1187 0.64 +1.5
505,393 - GFF1187 0.64 +0.3
505,602 + GFF1187 0.86 +0.3
505,602 + GFF1187 0.86 -1.0
505,603 - GFF1187 0.87 -0.7

Or see this region's nucleotide sequence