Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1183 and GFF1184 are separated by 342 nucleotides GFF1184 and GFF1185 are separated by 12 nucleotides GFF1185 and GFF1186 are separated by 544 nucleotides
GFF1183 - Regulator of nucleoside diphosphate kinase, at 500,132 to 500,533
GFF1183
GFF1184 - UPF0060 membrane protein YnfA, at 500,876 to 501,208
GFF1184
GFF1185 - Transcriptional regulator, AraC family, at 501,221 to 502,084
GFF1185
GFF1186 - Ferrichrome-iron receptor, at 502,629 to 504,782
GFF1186
Position (kb) 501
502
503 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 500.645 kb on + strand at 500.645 kb on + strand at 500.645 kb on + strand at 500.645 kb on + strand at 500.646 kb on - strand at 500.807 kb on + strand at 500.807 kb on + strand at 500.808 kb on - strand at 500.875 kb on + strand at 500.875 kb on + strand at 500.875 kb on + strand at 500.876 kb on - strand at 500.876 kb on - strand at 500.876 kb on - strand at 500.876 kb on - strand at 500.945 kb on + strand, within GFF1184 at 500.945 kb on + strand, within GFF1184 at 500.945 kb on + strand, within GFF1184 at 500.945 kb on + strand, within GFF1184 at 500.945 kb on + strand, within GFF1184 at 500.946 kb on - strand, within GFF1184 at 500.946 kb on - strand, within GFF1184 at 500.946 kb on - strand, within GFF1184 at 500.946 kb on - strand, within GFF1184 at 500.946 kb on - strand, within GFF1184 at 500.946 kb on - strand, within GFF1184 at 500.954 kb on + strand, within GFF1184 at 500.954 kb on + strand, within GFF1184 at 500.954 kb on + strand, within GFF1184 at 500.954 kb on + strand, within GFF1184 at 500.954 kb on + strand, within GFF1184 at 500.955 kb on - strand, within GFF1184 at 500.955 kb on - strand, within GFF1184 at 500.955 kb on - strand, within GFF1184 at 500.955 kb on - strand, within GFF1184 at 501.065 kb on + strand, within GFF1184 at 501.065 kb on + strand, within GFF1184 at 501.065 kb on + strand, within GFF1184 at 501.065 kb on + strand, within GFF1184 at 501.065 kb on + strand, within GFF1184 at 501.066 kb on - strand, within GFF1184 at 501.066 kb on - strand, within GFF1184 at 501.066 kb on - strand, within GFF1184 at 501.066 kb on - strand, within GFF1184 at 501.066 kb on - strand, within GFF1184 at 501.066 kb on - strand, within GFF1184 at 501.075 kb on - strand, within GFF1184 at 501.086 kb on + strand, within GFF1184 at 501.086 kb on + strand, within GFF1184 at 501.086 kb on + strand, within GFF1184 at 501.086 kb on + strand, within GFF1184 at 501.086 kb on + strand, within GFF1184 at 501.086 kb on + strand, within GFF1184 at 501.086 kb on + strand, within GFF1184 at 501.087 kb on - strand, within GFF1184 at 501.087 kb on - strand, within GFF1184 at 501.087 kb on - strand, within GFF1184 at 501.087 kb on - strand, within GFF1184 at 501.303 kb on + strand at 501.304 kb on - strand at 501.304 kb on - strand at 501.304 kb on - strand at 501.336 kb on + strand, within GFF1185 at 501.336 kb on + strand, within GFF1185 at 501.363 kb on + strand, within GFF1185 at 501.363 kb on + strand, within GFF1185 at 501.363 kb on + strand, within GFF1185 at 501.396 kb on + strand, within GFF1185 at 501.423 kb on + strand, within GFF1185 at 501.423 kb on + strand, within GFF1185 at 501.423 kb on + strand, within GFF1185 at 501.437 kb on + strand, within GFF1185 at 501.437 kb on + strand, within GFF1185 at 501.437 kb on + strand, within GFF1185 at 501.438 kb on - strand, within GFF1185 at 501.493 kb on - strand, within GFF1185 at 501.493 kb on - strand, within GFF1185 at 501.501 kb on + strand, within GFF1185 at 501.501 kb on + strand, within GFF1185 at 501.501 kb on + strand, within GFF1185 at 501.501 kb on + strand, within GFF1185 at 501.502 kb on - strand, within GFF1185 at 501.502 kb on - strand, within GFF1185 at 501.502 kb on - strand, within GFF1185 at 501.505 kb on - strand, within GFF1185 at 501.505 kb on - strand, within GFF1185 at 501.505 kb on - strand, within GFF1185 at 501.505 kb on - strand, within GFF1185 at 501.820 kb on - strand, within GFF1185 at 501.939 kb on + strand, within GFF1185 at 501.940 kb on - strand, within GFF1185 at 502.056 kb on + strand at 502.056 kb on + strand at 502.056 kb on + strand at 502.057 kb on - strand at 502.057 kb on - strand at 502.263 kb on + strand at 502.263 kb on + strand at 502.263 kb on + strand at 502.263 kb on + strand at 502.270 kb on + strand at 502.271 kb on - strand at 502.271 kb on - strand at 502.271 kb on - strand at 502.271 kb on - strand at 502.271 kb on - strand at 502.271 kb on - strand at 502.286 kb on + strand at 502.286 kb on + strand at 502.287 kb on - strand at 502.287 kb on - strand at 502.298 kb on + strand at 502.298 kb on + strand at 502.299 kb on - strand at 502.299 kb on - strand at 502.316 kb on - strand at 502.320 kb on + strand at 502.321 kb on - strand at 502.321 kb on - strand at 502.321 kb on - strand at 502.322 kb on + strand at 502.322 kb on + strand at 502.322 kb on + strand at 502.323 kb on - strand at 502.323 kb on - strand at 502.426 kb on + strand at 502.426 kb on + strand at 502.426 kb on + strand at 502.426 kb on + strand at 502.427 kb on - strand at 502.427 kb on - strand at 502.437 kb on + strand at 502.438 kb on - strand at 502.438 kb on - strand at 502.438 kb on - strand at 502.438 kb on - strand at 502.503 kb on - strand at 502.503 kb on - strand at 502.503 kb on - strand at 502.562 kb on - strand at 502.685 kb on - strand at 502.685 kb on - strand at 502.685 kb on - strand at 502.685 kb on - strand at 502.703 kb on - strand at 502.703 kb on - strand at 502.789 kb on + strand at 502.790 kb on - strand at 502.790 kb on - strand at 502.868 kb on - strand, within GFF1186
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 500,645 + -0.6 500,645 + +0.1 500,645 + -0.2 500,645 + -1.5 500,646 - -0.9 500,807 + -0.1 500,807 + -0.1 500,808 - -0.3 500,875 + +0.4 500,875 + -0.1 500,875 + -1.2 500,876 - -0.9 500,876 - +0.3 500,876 - -0.2 500,876 - -1.1 500,945 + GFF1184 0.21 -0.9 500,945 + GFF1184 0.21 +0.4 500,945 + GFF1184 0.21 -0.3 500,945 + GFF1184 0.21 +0.5 500,945 + GFF1184 0.21 -0.8 500,946 - GFF1184 0.21 -0.5 500,946 - GFF1184 0.21 -0.8 500,946 - GFF1184 0.21 +0.8 500,946 - GFF1184 0.21 -0.2 500,946 - GFF1184 0.21 -0.5 500,946 - GFF1184 0.21 +1.4 500,954 + GFF1184 0.23 +0.1 500,954 + GFF1184 0.23 +0.7 500,954 + GFF1184 0.23 -0.6 500,954 + GFF1184 0.23 -0.4 500,954 + GFF1184 0.23 -1.1 500,955 - GFF1184 0.24 +0.1 500,955 - GFF1184 0.24 +0.4 500,955 - GFF1184 0.24 -0.4 500,955 - GFF1184 0.24 -0.2 501,065 + GFF1184 0.57 +0.4 501,065 + GFF1184 0.57 -0.1 501,065 + GFF1184 0.57 -0.1 501,065 + GFF1184 0.57 -0.6 501,065 + GFF1184 0.57 +0.2 501,066 - GFF1184 0.57 -0.7 501,066 - GFF1184 0.57 +1.1 501,066 - GFF1184 0.57 -0.3 501,066 - GFF1184 0.57 -0.6 501,066 - GFF1184 0.57 +0.2 501,066 - GFF1184 0.57 -2.1 501,075 - GFF1184 0.60 +0.1 501,086 + GFF1184 0.63 -1.0 501,086 + GFF1184 0.63 -1.0 501,086 + GFF1184 0.63 +0.5 501,086 + GFF1184 0.63 +1.5 501,086 + GFF1184 0.63 -0.3 501,086 + GFF1184 0.63 +0.6 501,086 + GFF1184 0.63 +0.1 501,087 - GFF1184 0.63 -1.7 501,087 - GFF1184 0.63 +0.7 501,087 - GFF1184 0.63 +3.0 501,087 - GFF1184 0.63 -2.0 501,303 + -0.5 501,304 - +1.1 501,304 - +0.4 501,304 - +1.4 501,336 + GFF1185 0.13 +0.8 501,336 + GFF1185 0.13 -0.3 501,363 + GFF1185 0.16 -0.8 501,363 + GFF1185 0.16 +0.4 501,363 + GFF1185 0.16 -0.6 501,396 + GFF1185 0.20 -1.5 501,423 + GFF1185 0.23 +0.6 501,423 + GFF1185 0.23 -1.2 501,423 + GFF1185 0.23 -1.9 501,437 + GFF1185 0.25 -0.1 501,437 + GFF1185 0.25 +0.1 501,437 + GFF1185 0.25 -1.4 501,438 - GFF1185 0.25 -1.0 501,493 - GFF1185 0.31 +0.3 501,493 - GFF1185 0.31 -0.7 501,501 + GFF1185 0.32 +0.7 501,501 + GFF1185 0.32 +0.5 501,501 + GFF1185 0.32 -0.1 501,501 + GFF1185 0.32 -2.1 501,502 - GFF1185 0.33 -1.2 501,502 - GFF1185 0.33 -0.6 501,502 - GFF1185 0.33 -0.7 501,505 - GFF1185 0.33 -0.4 501,505 - GFF1185 0.33 +1.1 501,505 - GFF1185 0.33 -0.3 501,505 - GFF1185 0.33 +0.1 501,820 - GFF1185 0.69 -0.4 501,939 + GFF1185 0.83 -0.0 501,940 - GFF1185 0.83 -1.1 502,056 + -1.0 502,056 + +0.1 502,056 + -0.3 502,057 - -0.3 502,057 - -0.4 502,263 + -0.1 502,263 + -0.4 502,263 + +1.4 502,263 + -0.7 502,270 + +0.1 502,271 - -0.6 502,271 - -1.5 502,271 - -0.1 502,271 - -0.5 502,271 - +3.8 502,271 - +2.7 502,286 + -0.2 502,286 + -0.4 502,287 - -1.5 502,287 - +0.1 502,298 + -0.6 502,298 + -1.7 502,299 - +0.3 502,299 - -0.7 502,316 - -0.7 502,320 + -0.8 502,321 - -1.1 502,321 - -0.0 502,321 - -1.6 502,322 + -0.2 502,322 + -0.7 502,322 + +1.3 502,323 - -0.2 502,323 - -0.0 502,426 + +0.9 502,426 + -0.7 502,426 + -0.0 502,426 + -0.3 502,427 - -0.3 502,427 - -0.1 502,437 + -0.5 502,438 - -0.7 502,438 - +0.1 502,438 - -0.2 502,438 - +0.1 502,503 - -1.2 502,503 - -1.1 502,503 - +0.6 502,562 - -0.3 502,685 - -0.4 502,685 - +0.3 502,685 - -0.4 502,685 - +0.1 502,703 - -0.9 502,703 - -0.4 502,789 + -0.6 502,790 - +0.5 502,790 - +0.1 502,868 - GFF1186 0.11 +1.4
Or see this region's nucleotide sequence