Strain Fitness in Variovorax sp. SCN45 around GFF1143

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1142 and GFF1143 are separated by 3 nucleotidesGFF1143 and GFF1144 are separated by 38 nucleotides GFF1142 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 457,586 to 459,019 GFF1142 GFF1143 - no description, at 459,023 to 459,760 GFF1143 GFF1144 - hypothetical protein, at 459,799 to 461,700 GFF1144 Position (kb) 459 460Strain fitness (log2 ratio) -3 -2 -1 0 1at 458.166 kb on + strand, within GFF1142at 458.166 kb on + strand, within GFF1142at 458.167 kb on - strand, within GFF1142at 458.313 kb on + strand, within GFF1142at 458.313 kb on + strand, within GFF1142at 458.314 kb on - strand, within GFF1142at 458.314 kb on - strand, within GFF1142at 458.314 kb on - strand, within GFF1142at 458.457 kb on + strand, within GFF1142at 458.457 kb on + strand, within GFF1142at 458.571 kb on + strand, within GFF1142at 458.571 kb on + strand, within GFF1142at 458.571 kb on + strand, within GFF1142at 458.571 kb on + strand, within GFF1142at 458.571 kb on + strand, within GFF1142at 458.571 kb on + strand, within GFF1142at 458.571 kb on + strand, within GFF1142at 458.571 kb on + strand, within GFF1142at 458.571 kb on + strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.572 kb on - strand, within GFF1142at 458.631 kb on + strand, within GFF1142at 458.631 kb on + strand, within GFF1142at 458.631 kb on + strand, within GFF1142at 458.631 kb on + strand, within GFF1142at 458.631 kb on + strand, within GFF1142at 458.632 kb on - strand, within GFF1142at 458.632 kb on - strand, within GFF1142at 458.632 kb on - strand, within GFF1142at 458.632 kb on - strand, within GFF1142at 458.632 kb on - strand, within GFF1142at 458.632 kb on - strand, within GFF1142at 458.632 kb on - strand, within GFF1142at 458.757 kb on + strand, within GFF1142at 458.757 kb on + strand, within GFF1142at 458.757 kb on + strand, within GFF1142at 458.757 kb on + strand, within GFF1142at 458.757 kb on + strand, within GFF1142at 458.757 kb on + strand, within GFF1142at 458.757 kb on + strand, within GFF1142at 458.757 kb on + strand, within GFF1142at 458.757 kb on + strand, within GFF1142at 458.757 kb on + strand, within GFF1142at 458.758 kb on - strand, within GFF1142at 458.758 kb on - strand, within GFF1142at 458.758 kb on - strand, within GFF1142at 458.758 kb on - strand, within GFF1142at 458.758 kb on - strand, within GFF1142at 458.763 kb on + strand, within GFF1142at 458.763 kb on + strand, within GFF1142at 458.763 kb on + strand, within GFF1142at 458.763 kb on + strand, within GFF1142at 458.763 kb on + strand, within GFF1142at 458.763 kb on + strand, within GFF1142at 458.763 kb on + strand, within GFF1142at 458.763 kb on + strand, within GFF1142at 458.763 kb on + strand, within GFF1142at 458.763 kb on + strand, within GFF1142at 458.764 kb on - strand, within GFF1142at 458.764 kb on - strand, within GFF1142at 458.764 kb on - strand, within GFF1142at 458.764 kb on - strand, within GFF1142at 459.304 kb on + strand, within GFF1143at 459.305 kb on - strand, within GFF1143at 459.305 kb on - strand, within GFF1143at 459.305 kb on - strand, within GFF1143at 459.305 kb on - strand, within GFF1143at 459.597 kb on + strand, within GFF1143at 459.597 kb on + strand, within GFF1143at 459.597 kb on + strand, within GFF1143at 459.598 kb on - strand, within GFF1143at 459.598 kb on - strand, within GFF1143at 459.598 kb on - strand, within GFF1143at 459.598 kb on - strand, within GFF1143at 459.651 kb on + strand, within GFF1143at 459.651 kb on + strand, within GFF1143at 459.651 kb on + strand, within GFF1143at 459.651 kb on + strand, within GFF1143at 459.651 kb on + strand, within GFF1143at 459.651 kb on + strand, within GFF1143at 459.651 kb on + strand, within GFF1143at 459.652 kb on - strand, within GFF1143at 459.652 kb on - strand, within GFF1143at 459.652 kb on - strand, within GFF1143at 459.772 kb on + strandat 459.772 kb on + strandat 459.772 kb on + strandat 459.772 kb on + strandat 459.772 kb on + strandat 459.772 kb on + strandat 459.772 kb on + strandat 459.772 kb on + strandat 459.773 kb on - strandat 459.773 kb on - strandat 459.773 kb on - strandat 459.773 kb on - strandat 459.773 kb on - strandat 459.773 kb on - strandat 459.773 kb on - strandat 459.773 kb on - strandat 459.773 kb on - strandat 459.773 kb on - strandat 459.777 kb on + strandat 459.777 kb on + strandat 459.778 kb on - strandat 459.778 kb on - strandat 459.778 kb on - strandat 459.778 kb on - strandat 459.821 kb on + strandat 459.821 kb on + strandat 459.821 kb on + strandat 459.822 kb on - strandat 459.822 kb on - strandat 459.822 kb on - strandat 459.822 kb on - strandat 459.822 kb on - strandat 459.822 kb on - strandat 459.835 kb on + strandat 459.835 kb on + strandat 459.835 kb on + strandat 459.835 kb on + strandat 459.835 kb on + strandat 459.836 kb on - strandat 459.836 kb on - strandat 459.836 kb on - strandat 459.836 kb on - strandat 459.836 kb on - strandat 459.836 kb on - strandat 459.836 kb on - strandat 459.961 kb on + strandat 459.961 kb on + strandat 459.961 kb on + strandat 459.962 kb on - strandat 459.962 kb on - strandat 459.962 kb on - strandat 460.331 kb on + strand, within GFF1144at 460.331 kb on + strand, within GFF1144at 460.331 kb on + strand, within GFF1144at 460.477 kb on - strand, within GFF1144

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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458,166 + GFF1142 0.40 -0.8
458,166 + GFF1142 0.40 -1.1
458,167 - GFF1142 0.41 +1.0
458,313 + GFF1142 0.51 -0.5
458,313 + GFF1142 0.51 -0.5
458,314 - GFF1142 0.51 -1.8
458,314 - GFF1142 0.51 -0.0
458,314 - GFF1142 0.51 +0.1
458,457 + GFF1142 0.61 +0.0
458,457 + GFF1142 0.61 +0.3
458,571 + GFF1142 0.69 -0.6
458,571 + GFF1142 0.69 -1.6
458,571 + GFF1142 0.69 +0.2
458,571 + GFF1142 0.69 +0.4
458,571 + GFF1142 0.69 -0.1
458,571 + GFF1142 0.69 +0.9
458,571 + GFF1142 0.69 -0.3
458,571 + GFF1142 0.69 +0.6
458,571 + GFF1142 0.69 +0.1
458,572 - GFF1142 0.69 -1.0
458,572 - GFF1142 0.69 +0.7
458,572 - GFF1142 0.69 -1.8
458,572 - GFF1142 0.69 -0.7
458,572 - GFF1142 0.69 -0.2
458,572 - GFF1142 0.69 +0.1
458,572 - GFF1142 0.69 +0.5
458,572 - GFF1142 0.69 -1.5
458,572 - GFF1142 0.69 +0.9
458,572 - GFF1142 0.69 -1.1
458,572 - GFF1142 0.69 +0.1
458,572 - GFF1142 0.69 -1.2
458,572 - GFF1142 0.69 -0.4
458,631 + GFF1142 0.73 -0.2
458,631 + GFF1142 0.73 -0.9
458,631 + GFF1142 0.73 -0.3
458,631 + GFF1142 0.73 +1.3
458,631 + GFF1142 0.73 -1.3
458,632 - GFF1142 0.73 +0.2
458,632 - GFF1142 0.73 +0.5
458,632 - GFF1142 0.73 -0.4
458,632 - GFF1142 0.73 -0.4
458,632 - GFF1142 0.73 -0.9
458,632 - GFF1142 0.73 +0.5
458,632 - GFF1142 0.73 -1.1
458,757 + GFF1142 0.82 -0.7
458,757 + GFF1142 0.82 -0.8
458,757 + GFF1142 0.82 -0.9
458,757 + GFF1142 0.82 -0.5
458,757 + GFF1142 0.82 -0.5
458,757 + GFF1142 0.82 -0.4
458,757 + GFF1142 0.82 -0.6
458,757 + GFF1142 0.82 +0.2
458,757 + GFF1142 0.82 +0.1
458,757 + GFF1142 0.82 +0.7
458,758 - GFF1142 0.82 +0.3
458,758 - GFF1142 0.82 +0.1
458,758 - GFF1142 0.82 -0.6
458,758 - GFF1142 0.82 +0.5
458,758 - GFF1142 0.82 -0.6
458,763 + GFF1142 0.82 -0.4
458,763 + GFF1142 0.82 -1.0
458,763 + GFF1142 0.82 +0.4
458,763 + GFF1142 0.82 -1.1
458,763 + GFF1142 0.82 +0.0
458,763 + GFF1142 0.82 -0.0
458,763 + GFF1142 0.82 +0.0
458,763 + GFF1142 0.82 +0.1
458,763 + GFF1142 0.82 +0.3
458,763 + GFF1142 0.82 -0.2
458,764 - GFF1142 0.82 -0.1
458,764 - GFF1142 0.82 -0.5
458,764 - GFF1142 0.82 +0.4
458,764 - GFF1142 0.82 -0.2
459,304 + GFF1143 0.38 +0.2
459,305 - GFF1143 0.38 +0.0
459,305 - GFF1143 0.38 -0.9
459,305 - GFF1143 0.38 +0.5
459,305 - GFF1143 0.38 -0.3
459,597 + GFF1143 0.78 -0.6
459,597 + GFF1143 0.78 +0.0
459,597 + GFF1143 0.78 -0.6
459,598 - GFF1143 0.78 -0.2
459,598 - GFF1143 0.78 +1.1
459,598 - GFF1143 0.78 +1.0
459,598 - GFF1143 0.78 +0.0
459,651 + GFF1143 0.85 +0.2
459,651 + GFF1143 0.85 -0.1
459,651 + GFF1143 0.85 -0.4
459,651 + GFF1143 0.85 -0.0
459,651 + GFF1143 0.85 +0.6
459,651 + GFF1143 0.85 -0.0
459,651 + GFF1143 0.85 -0.4
459,652 - GFF1143 0.85 +0.3
459,652 - GFF1143 0.85 +0.4
459,652 - GFF1143 0.85 +0.1
459,772 + -1.3
459,772 + +1.7
459,772 + -0.4
459,772 + -0.0
459,772 + +0.3
459,772 + -1.2
459,772 + -0.1
459,772 + +1.7
459,773 - -0.6
459,773 - -0.1
459,773 - -0.0
459,773 - -0.2
459,773 - -0.8
459,773 - -1.7
459,773 - -3.1
459,773 - -0.8
459,773 - -1.2
459,773 - +0.9
459,777 + -1.0
459,777 + +1.5
459,778 - -1.3
459,778 - -0.2
459,778 - -0.7
459,778 - -0.4
459,821 + -1.4
459,821 + -0.4
459,821 + +0.4
459,822 - -2.0
459,822 - -0.1
459,822 - +0.7
459,822 - +0.3
459,822 - -0.0
459,822 - -0.8
459,835 + -1.0
459,835 + +0.5
459,835 + -0.6
459,835 + -0.0
459,835 + -0.6
459,836 - -0.3
459,836 - -0.4
459,836 - -0.9
459,836 - +0.3
459,836 - -0.4
459,836 - +0.2
459,836 - -0.8
459,961 + -1.1
459,961 + +0.5
459,961 + -0.6
459,962 - -1.0
459,962 - -0.4
459,962 - -1.3
460,331 + GFF1144 0.28 +1.1
460,331 + GFF1144 0.28 +0.1
460,331 + GFF1144 0.28 -0.1
460,477 - GFF1144 0.36 -0.6

Or see this region's nucleotide sequence