Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1140 and GFF1141 are separated by 7 nucleotides GFF1141 and GFF1142 overlap by 1 nucleotides
GFF1140 - Domain of unknown function / Efflux ABC transporter, permease protein, at 455,408 to 456,592
GFF1140
GFF1141 - Membrane-fusion protein, at 456,600 to 457,586
GFF1141
GFF1142 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 457,586 to 459,019
GFF1142
Position (kb) 456
457
458 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 456.036 kb on + strand, within GFF1140 at 456.036 kb on + strand, within GFF1140 at 456.036 kb on + strand, within GFF1140 at 456.036 kb on + strand, within GFF1140 at 456.037 kb on - strand, within GFF1140 at 456.092 kb on + strand, within GFF1140 at 456.092 kb on + strand, within GFF1140 at 456.093 kb on - strand, within GFF1140 at 456.093 kb on - strand, within GFF1140 at 456.093 kb on - strand, within GFF1140 at 456.093 kb on - strand, within GFF1140 at 456.345 kb on + strand, within GFF1140 at 456.345 kb on + strand, within GFF1140 at 456.346 kb on - strand, within GFF1140 at 456.346 kb on - strand, within GFF1140 at 456.346 kb on - strand, within GFF1140 at 456.346 kb on - strand, within GFF1140 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.618 kb on - strand at 457.618 kb on - strand at 457.618 kb on - strand at 457.677 kb on + strand at 457.677 kb on + strand at 457.677 kb on + strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.833 kb on + strand, within GFF1142 at 457.834 kb on - strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 458.166 kb on + strand, within GFF1142 at 458.166 kb on + strand, within GFF1142 at 458.167 kb on - strand, within GFF1142 at 458.313 kb on + strand, within GFF1142 at 458.313 kb on + strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.457 kb on + strand, within GFF1142 at 458.457 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 456,036 + GFF1140 0.53 -0.2 456,036 + GFF1140 0.53 -0.6 456,036 + GFF1140 0.53 -0.6 456,036 + GFF1140 0.53 -0.6 456,037 - GFF1140 0.53 -0.0 456,092 + GFF1140 0.58 +0.5 456,092 + GFF1140 0.58 -0.9 456,093 - GFF1140 0.58 -1.2 456,093 - GFF1140 0.58 +1.2 456,093 - GFF1140 0.58 +0.7 456,093 - GFF1140 0.58 +0.4 456,345 + GFF1140 0.79 -0.3 456,345 + GFF1140 0.79 +0.2 456,346 - GFF1140 0.79 -0.8 456,346 - GFF1140 0.79 +0.4 456,346 - GFF1140 0.79 -0.1 456,346 - GFF1140 0.79 +0.1 456,742 + GFF1141 0.14 -0.4 456,742 + GFF1141 0.14 -0.2 456,742 + GFF1141 0.14 -0.1 456,742 + GFF1141 0.14 +0.7 456,742 + GFF1141 0.14 +0.1 456,742 + GFF1141 0.14 -3.4 456,742 + GFF1141 0.14 -0.6 456,742 + GFF1141 0.14 +0.1 456,743 - GFF1141 0.14 -1.0 456,743 - GFF1141 0.14 -0.8 456,743 - GFF1141 0.14 -0.7 456,743 - GFF1141 0.14 -0.6 456,743 - GFF1141 0.14 -1.3 456,743 - GFF1141 0.14 +0.1 456,743 - GFF1141 0.14 -1.0 456,745 + GFF1141 0.15 -0.3 456,745 + GFF1141 0.15 -0.3 456,745 + GFF1141 0.15 -0.3 456,745 + GFF1141 0.15 -0.6 456,745 + GFF1141 0.15 -0.3 456,746 - GFF1141 0.15 -0.3 456,746 - GFF1141 0.15 -0.2 456,746 - GFF1141 0.15 -0.5 456,746 - GFF1141 0.15 -0.9 456,746 - GFF1141 0.15 -0.3 457,078 + GFF1141 0.48 -0.3 457,078 + GFF1141 0.48 -0.5 457,078 + GFF1141 0.48 +0.2 457,078 + GFF1141 0.48 +0.6 457,078 + GFF1141 0.48 +0.0 457,078 + GFF1141 0.48 +0.2 457,079 - GFF1141 0.49 -0.5 457,079 - GFF1141 0.49 -1.5 457,079 - GFF1141 0.49 -1.1 457,079 - GFF1141 0.49 -0.2 457,617 + -1.2 457,617 + -0.1 457,617 + -0.5 457,617 + -0.4 457,617 + +0.1 457,618 - -0.1 457,618 - +0.5 457,618 - -1.0 457,677 + +0.4 457,677 + -0.4 457,677 + -0.9 457,678 - -1.4 457,678 - -1.3 457,678 - -0.2 457,678 - -0.3 457,678 - -1.5 457,678 - -0.9 457,833 + GFF1142 0.17 -1.6 457,834 - GFF1142 0.17 +0.1 457,977 + GFF1142 0.27 +0.1 457,977 + GFF1142 0.27 -2.4 457,977 + GFF1142 0.27 +0.7 457,977 + GFF1142 0.27 -1.3 457,978 - GFF1142 0.27 +0.7 457,978 - GFF1142 0.27 -0.1 457,978 - GFF1142 0.27 -1.8 457,978 - GFF1142 0.27 -0.7 458,166 + GFF1142 0.40 -0.8 458,166 + GFF1142 0.40 -1.1 458,167 - GFF1142 0.41 +1.0 458,313 + GFF1142 0.51 -0.5 458,313 + GFF1142 0.51 -0.5 458,314 - GFF1142 0.51 -1.8 458,314 - GFF1142 0.51 -0.0 458,314 - GFF1142 0.51 +0.1 458,457 + GFF1142 0.61 +0.0 458,457 + GFF1142 0.61 +0.3 458,571 + GFF1142 0.69 -0.6 458,571 + GFF1142 0.69 -1.6 458,571 + GFF1142 0.69 +0.2 458,571 + GFF1142 0.69 +0.4 458,571 + GFF1142 0.69 -0.1 458,571 + GFF1142 0.69 +0.9 458,571 + GFF1142 0.69 -0.3 458,571 + GFF1142 0.69 +0.6 458,571 + GFF1142 0.69 +0.1 458,572 - GFF1142 0.69 -1.0 458,572 - GFF1142 0.69 +0.7 458,572 - GFF1142 0.69 -1.8 458,572 - GFF1142 0.69 -0.7 458,572 - GFF1142 0.69 -0.2 458,572 - GFF1142 0.69 +0.1 458,572 - GFF1142 0.69 +0.5 458,572 - GFF1142 0.69 -1.5 458,572 - GFF1142 0.69 +0.9 458,572 - GFF1142 0.69 -1.1 458,572 - GFF1142 0.69 +0.1 458,572 - GFF1142 0.69 -1.2 458,572 - GFF1142 0.69 -0.4
Or see this region's nucleotide sequence