Strain Fitness in Variovorax sp. SCN45 around GFF1140

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1139 and GFF1140 overlap by 1 nucleotidesGFF1140 and GFF1141 are separated by 7 nucleotidesGFF1141 and GFF1142 overlap by 1 nucleotides GFF1139 - Domain of unknown function / Efflux ABC transporter, permease protein, at 454,254 to 455,408 GFF1139 GFF1140 - Domain of unknown function / Efflux ABC transporter, permease protein, at 455,408 to 456,592 GFF1140 GFF1141 - Membrane-fusion protein, at 456,600 to 457,586 GFF1141 GFF1142 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 457,586 to 459,019 GFF1142 Position (kb) 455 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 454.591 kb on + strand, within GFF1139at 454.591 kb on + strand, within GFF1139at 454.591 kb on + strand, within GFF1139at 454.591 kb on + strand, within GFF1139at 454.591 kb on + strand, within GFF1139at 454.591 kb on + strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.639 kb on + strand, within GFF1139at 454.640 kb on - strand, within GFF1139at 454.669 kb on + strand, within GFF1139at 454.669 kb on + strand, within GFF1139at 454.670 kb on - strand, within GFF1139at 454.670 kb on - strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.994 kb on - strand, within GFF1139at 454.994 kb on - strand, within GFF1139at 455.020 kb on + strand, within GFF1139at 455.020 kb on + strand, within GFF1139at 455.021 kb on - strand, within GFF1139at 455.102 kb on - strand, within GFF1139at 455.275 kb on + strand, within GFF1139at 455.288 kb on - strand, within GFF1139at 455.288 kb on - strand, within GFF1139at 455.299 kb on + strandat 455.299 kb on + strandat 455.299 kb on + strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.520 kb on + strandat 455.520 kb on + strandat 455.520 kb on + strandat 455.520 kb on + strandat 455.520 kb on + strandat 455.521 kb on - strandat 455.521 kb on - strandat 455.521 kb on - strandat 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.577 kb on + strand, within GFF1140at 455.577 kb on + strand, within GFF1140at 455.577 kb on + strand, within GFF1140at 455.577 kb on + strand, within GFF1140at 455.578 kb on - strand, within GFF1140at 455.578 kb on - strand, within GFF1140at 456.036 kb on + strand, within GFF1140at 456.036 kb on + strand, within GFF1140at 456.036 kb on + strand, within GFF1140at 456.036 kb on + strand, within GFF1140at 456.037 kb on - strand, within GFF1140at 456.092 kb on + strand, within GFF1140at 456.092 kb on + strand, within GFF1140at 456.093 kb on - strand, within GFF1140at 456.093 kb on - strand, within GFF1140at 456.093 kb on - strand, within GFF1140at 456.093 kb on - strand, within GFF1140at 456.345 kb on + strand, within GFF1140at 456.345 kb on + strand, within GFF1140at 456.346 kb on - strand, within GFF1140at 456.346 kb on - strand, within GFF1140at 456.346 kb on - strand, within GFF1140at 456.346 kb on - strand, within GFF1140at 456.742 kb on + strand, within GFF1141at 456.742 kb on + strand, within GFF1141at 456.742 kb on + strand, within GFF1141at 456.742 kb on + strand, within GFF1141at 456.742 kb on + strand, within GFF1141at 456.742 kb on + strand, within GFF1141at 456.742 kb on + strand, within GFF1141at 456.742 kb on + strand, within GFF1141at 456.743 kb on - strand, within GFF1141at 456.743 kb on - strand, within GFF1141at 456.743 kb on - strand, within GFF1141at 456.743 kb on - strand, within GFF1141at 456.743 kb on - strand, within GFF1141at 456.743 kb on - strand, within GFF1141at 456.743 kb on - strand, within GFF1141at 456.745 kb on + strand, within GFF1141at 456.745 kb on + strand, within GFF1141at 456.745 kb on + strand, within GFF1141at 456.745 kb on + strand, within GFF1141at 456.745 kb on + strand, within GFF1141at 456.746 kb on - strand, within GFF1141at 456.746 kb on - strand, within GFF1141at 456.746 kb on - strand, within GFF1141at 456.746 kb on - strand, within GFF1141at 456.746 kb on - strand, within GFF1141at 457.078 kb on + strand, within GFF1141at 457.078 kb on + strand, within GFF1141at 457.078 kb on + strand, within GFF1141at 457.078 kb on + strand, within GFF1141at 457.078 kb on + strand, within GFF1141at 457.078 kb on + strand, within GFF1141at 457.079 kb on - strand, within GFF1141at 457.079 kb on - strand, within GFF1141at 457.079 kb on - strand, within GFF1141at 457.079 kb on - strand, within GFF1141

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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454,591 + GFF1139 0.29 -0.3
454,591 + GFF1139 0.29 -0.6
454,591 + GFF1139 0.29 +0.1
454,591 + GFF1139 0.29 -0.4
454,591 + GFF1139 0.29 +1.1
454,591 + GFF1139 0.29 +0.1
454,592 - GFF1139 0.29 +0.6
454,592 - GFF1139 0.29 -0.2
454,592 - GFF1139 0.29 -0.7
454,592 - GFF1139 0.29 +0.1
454,592 - GFF1139 0.29 -0.4
454,592 - GFF1139 0.29 -1.5
454,592 - GFF1139 0.29 +2.1
454,592 - GFF1139 0.29 -0.6
454,639 + GFF1139 0.33 -0.9
454,640 - GFF1139 0.33 -0.1
454,669 + GFF1139 0.36 -0.4
454,669 + GFF1139 0.36 +0.3
454,670 - GFF1139 0.36 +0.6
454,670 - GFF1139 0.36 -2.1
454,837 + GFF1139 0.50 -0.2
454,837 + GFF1139 0.50 +0.5
454,837 + GFF1139 0.50 -1.1
454,837 + GFF1139 0.50 -0.4
454,837 + GFF1139 0.50 -0.8
454,837 + GFF1139 0.50 +0.1
454,837 + GFF1139 0.50 +0.4
454,837 + GFF1139 0.50 +0.9
454,837 + GFF1139 0.50 -0.9
454,837 + GFF1139 0.50 -0.7
454,837 + GFF1139 0.50 -2.0
454,837 + GFF1139 0.50 -0.9
454,837 + GFF1139 0.50 +0.1
454,838 - GFF1139 0.51 -0.0
454,838 - GFF1139 0.51 -0.7
454,838 - GFF1139 0.51 +1.9
454,838 - GFF1139 0.51 -1.5
454,838 - GFF1139 0.51 -0.2
454,838 - GFF1139 0.51 -0.9
454,838 - GFF1139 0.51 -0.9
454,838 - GFF1139 0.51 -1.4
454,838 - GFF1139 0.51 +0.1
454,838 - GFF1139 0.51 +0.1
454,838 - GFF1139 0.51 -0.7
454,838 - GFF1139 0.51 +0.6
454,994 - GFF1139 0.64 -0.2
454,994 - GFF1139 0.64 -0.0
455,020 + GFF1139 0.66 -0.7
455,020 + GFF1139 0.66 -0.4
455,021 - GFF1139 0.66 +2.7
455,102 - GFF1139 0.73 -1.0
455,275 + GFF1139 0.88 -1.8
455,288 - GFF1139 0.90 -2.0
455,288 - GFF1139 0.90 +0.3
455,299 + +1.7
455,299 + -0.2
455,299 + -0.4
455,300 - -0.1
455,300 - -0.1
455,300 - +1.7
455,300 - -1.1
455,300 - -0.9
455,300 - +0.6
455,300 - -0.1
455,300 - -0.6
455,520 + -0.6
455,520 + -0.3
455,520 + -0.0
455,520 + -1.0
455,520 + -1.4
455,521 - +1.0
455,521 - -0.3
455,521 - -0.5
455,568 + GFF1140 0.14 -1.2
455,568 + GFF1140 0.14 -1.7
455,568 + GFF1140 0.14 -0.6
455,568 + GFF1140 0.14 -0.0
455,568 + GFF1140 0.14 -0.6
455,568 + GFF1140 0.14 -0.7
455,568 + GFF1140 0.14 +0.7
455,568 + GFF1140 0.14 -0.6
455,568 + GFF1140 0.14 -0.6
455,568 + GFF1140 0.14 +0.3
455,568 + GFF1140 0.14 +0.7
455,568 + GFF1140 0.14 +0.1
455,569 - GFF1140 0.14 -0.9
455,569 - GFF1140 0.14 -0.9
455,569 - GFF1140 0.14 +0.1
455,569 - GFF1140 0.14 -1.4
455,569 - GFF1140 0.14 +0.9
455,569 - GFF1140 0.14 +0.5
455,569 - GFF1140 0.14 -1.3
455,569 - GFF1140 0.14 +0.6
455,577 + GFF1140 0.14 -0.7
455,577 + GFF1140 0.14 +0.9
455,577 + GFF1140 0.14 -0.8
455,577 + GFF1140 0.14 -0.3
455,578 - GFF1140 0.14 +0.1
455,578 - GFF1140 0.14 -0.6
456,036 + GFF1140 0.53 -0.2
456,036 + GFF1140 0.53 -0.6
456,036 + GFF1140 0.53 -0.6
456,036 + GFF1140 0.53 -0.6
456,037 - GFF1140 0.53 -0.0
456,092 + GFF1140 0.58 +0.5
456,092 + GFF1140 0.58 -0.9
456,093 - GFF1140 0.58 -1.2
456,093 - GFF1140 0.58 +1.2
456,093 - GFF1140 0.58 +0.7
456,093 - GFF1140 0.58 +0.4
456,345 + GFF1140 0.79 -0.3
456,345 + GFF1140 0.79 +0.2
456,346 - GFF1140 0.79 -0.8
456,346 - GFF1140 0.79 +0.4
456,346 - GFF1140 0.79 -0.1
456,346 - GFF1140 0.79 +0.1
456,742 + GFF1141 0.14 -0.4
456,742 + GFF1141 0.14 -0.2
456,742 + GFF1141 0.14 -0.1
456,742 + GFF1141 0.14 +0.7
456,742 + GFF1141 0.14 +0.1
456,742 + GFF1141 0.14 -3.4
456,742 + GFF1141 0.14 -0.6
456,742 + GFF1141 0.14 +0.1
456,743 - GFF1141 0.14 -1.0
456,743 - GFF1141 0.14 -0.8
456,743 - GFF1141 0.14 -0.7
456,743 - GFF1141 0.14 -0.6
456,743 - GFF1141 0.14 -1.3
456,743 - GFF1141 0.14 +0.1
456,743 - GFF1141 0.14 -1.0
456,745 + GFF1141 0.15 -0.3
456,745 + GFF1141 0.15 -0.3
456,745 + GFF1141 0.15 -0.3
456,745 + GFF1141 0.15 -0.6
456,745 + GFF1141 0.15 -0.3
456,746 - GFF1141 0.15 -0.3
456,746 - GFF1141 0.15 -0.2
456,746 - GFF1141 0.15 -0.5
456,746 - GFF1141 0.15 -0.9
456,746 - GFF1141 0.15 -0.3
457,078 + GFF1141 0.48 -0.3
457,078 + GFF1141 0.48 -0.5
457,078 + GFF1141 0.48 +0.2
457,078 + GFF1141 0.48 +0.6
457,078 + GFF1141 0.48 +0.0
457,078 + GFF1141 0.48 +0.2
457,079 - GFF1141 0.49 -0.5
457,079 - GFF1141 0.49 -1.5
457,079 - GFF1141 0.49 -1.1
457,079 - GFF1141 0.49 -0.2

Or see this region's nucleotide sequence