Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF112 and GFF113 are separated by 28 nucleotides GFF113 and GFF114 overlap by 11 nucleotides GFF114 and GFF115 are separated by 1 nucleotides GFF115 and GFF116 are separated by 3 nucleotides
GFF112 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 141,218 to 141,994
GFF112
GFF113 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 142,023 to 142,742
GFF113
GFF114 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 142,732 to 143,388
GFF114
GFF115 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 143,390 to 144,055
GFF115
GFF116 - RidA/YER057c/UK114 superfamily, group 1, at 144,059 to 144,571
GFF116
Position (kb) 142
143
144 Strain fitness (log2 ratio) -1
0
1
2
3 at 141.738 kb on + strand, within GFF112 at 141.739 kb on - strand, within GFF112 at 142.698 kb on + strand at 142.698 kb on + strand at 142.698 kb on + strand at 142.698 kb on + strand at 142.699 kb on - strand at 142.699 kb on - strand at 142.699 kb on - strand at 142.699 kb on - strand at 142.699 kb on - strand at 142.699 kb on - strand at 142.699 kb on - strand at 142.808 kb on + strand, within GFF114 at 142.808 kb on + strand, within GFF114 at 142.809 kb on - strand, within GFF114 at 142.940 kb on + strand, within GFF114 at 142.940 kb on + strand, within GFF114 at 142.940 kb on + strand, within GFF114 at 142.940 kb on + strand, within GFF114 at 142.940 kb on + strand, within GFF114 at 142.941 kb on - strand, within GFF114 at 142.941 kb on - strand, within GFF114 at 143.174 kb on + strand, within GFF114 at 143.174 kb on + strand, within GFF114 at 143.225 kb on + strand, within GFF114 at 143.225 kb on + strand, within GFF114 at 143.225 kb on + strand, within GFF114 at 143.225 kb on + strand, within GFF114 at 143.225 kb on + strand, within GFF114 at 143.225 kb on + strand, within GFF114 at 143.225 kb on + strand, within GFF114 at 143.226 kb on - strand, within GFF114 at 143.226 kb on - strand, within GFF114 at 143.226 kb on - strand, within GFF114 at 143.463 kb on + strand, within GFF115 at 143.463 kb on + strand, within GFF115 at 143.464 kb on - strand, within GFF115 at 143.464 kb on - strand, within GFF115 at 143.464 kb on - strand, within GFF115 at 143.484 kb on + strand, within GFF115 at 143.484 kb on + strand, within GFF115 at 143.485 kb on - strand, within GFF115 at 143.485 kb on - strand, within GFF115 at 143.732 kb on + strand, within GFF115 at 143.745 kb on + strand, within GFF115 at 143.745 kb on + strand, within GFF115 at 143.745 kb on + strand, within GFF115 at 143.746 kb on - strand, within GFF115 at 143.746 kb on - strand, within GFF115 at 143.746 kb on - strand, within GFF115 at 143.827 kb on - strand, within GFF115 at 143.827 kb on - strand, within GFF115 at 143.877 kb on + strand, within GFF115 at 143.877 kb on + strand, within GFF115 at 143.877 kb on + strand, within GFF115 at 143.877 kb on + strand, within GFF115 at 143.877 kb on + strand, within GFF115 at 143.877 kb on + strand, within GFF115 at 143.877 kb on + strand, within GFF115 at 143.878 kb on - strand, within GFF115 at 143.878 kb on - strand, within GFF115 at 143.878 kb on - strand, within GFF115 at 143.878 kb on - strand, within GFF115 at 143.977 kb on - strand, within GFF115 at 143.977 kb on - strand, within GFF115 at 144.019 kb on - strand at 144.048 kb on + strand at 144.048 kb on + strand at 144.333 kb on + strand, within GFF116 at 144.333 kb on + strand, within GFF116
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 141,738 + GFF112 0.67 +1.0 141,739 - GFF112 0.67 +0.5 142,698 + +0.9 142,698 + +0.6 142,698 + -0.3 142,698 + -1.4 142,699 - +0.0 142,699 - +0.7 142,699 - +0.6 142,699 - +0.4 142,699 - -0.0 142,699 - +0.2 142,699 - +0.6 142,808 + GFF114 0.12 -0.8 142,808 + GFF114 0.12 +0.1 142,809 - GFF114 0.12 -0.1 142,940 + GFF114 0.32 +0.3 142,940 + GFF114 0.32 +0.4 142,940 + GFF114 0.32 +0.1 142,940 + GFF114 0.32 -0.4 142,940 + GFF114 0.32 +1.3 142,941 - GFF114 0.32 +0.9 142,941 - GFF114 0.32 +0.7 143,174 + GFF114 0.67 -0.4 143,174 + GFF114 0.67 -0.2 143,225 + GFF114 0.75 +0.0 143,225 + GFF114 0.75 +1.1 143,225 + GFF114 0.75 +0.3 143,225 + GFF114 0.75 -0.3 143,225 + GFF114 0.75 -1.4 143,225 + GFF114 0.75 +0.4 143,225 + GFF114 0.75 +0.3 143,226 - GFF114 0.75 +0.0 143,226 - GFF114 0.75 -1.4 143,226 - GFF114 0.75 -0.9 143,463 + GFF115 0.11 +0.9 143,463 + GFF115 0.11 -0.3 143,464 - GFF115 0.11 -0.7 143,464 - GFF115 0.11 -1.4 143,464 - GFF115 0.11 -0.9 143,484 + GFF115 0.14 -0.9 143,484 + GFF115 0.14 -1.3 143,485 - GFF115 0.14 -0.9 143,485 - GFF115 0.14 +0.2 143,732 + GFF115 0.51 -0.2 143,745 + GFF115 0.53 +1.7 143,745 + GFF115 0.53 -1.1 143,745 + GFF115 0.53 -1.3 143,746 - GFF115 0.53 -0.2 143,746 - GFF115 0.53 -1.0 143,746 - GFF115 0.53 -0.5 143,827 - GFF115 0.66 -1.1 143,827 - GFF115 0.66 -0.1 143,877 + GFF115 0.73 +0.1 143,877 + GFF115 0.73 -0.9 143,877 + GFF115 0.73 +0.7 143,877 + GFF115 0.73 +0.4 143,877 + GFF115 0.73 +0.8 143,877 + GFF115 0.73 +0.4 143,877 + GFF115 0.73 -0.1 143,878 - GFF115 0.73 +1.3 143,878 - GFF115 0.73 +1.0 143,878 - GFF115 0.73 +3.0 143,878 - GFF115 0.73 -0.2 143,977 - GFF115 0.88 +3.0 143,977 - GFF115 0.88 -0.7 144,019 - +0.3 144,048 + -0.2 144,048 + +0.6 144,333 + GFF116 0.53 -0.3 144,333 + GFF116 0.53 -0.3
Or see this region's nucleotide sequence