Strain Fitness in Variovorax sp. SCN45 around GFF1115

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1113 and GFF1114 overlap by 1 nucleotidesGFF1114 and GFF1115 are separated by 75 nucleotidesGFF1115 and GFF1116 are separated by 17 nucleotides GFF1113 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 430,063 to 430,878 GFF1113 GFF1114 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 430,878 to 431,720 GFF1114 GFF1115 - Putative transmembrane protein, at 431,796 to 432,980 GFF1115 GFF1116 - Membrane-bound lytic murein transglycosylase D, at 432,998 to 434,590 GFF1116 Position (kb) 431 432 433Strain fitness (log2 ratio) -2 -1 0 1 2at 430.849 kb on + strandat 430.849 kb on + strandat 430.850 kb on - strandat 430.850 kb on - strandat 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.107 kb on - strand, within GFF1114at 431.107 kb on - strand, within GFF1114at 431.107 kb on - strand, within GFF1114at 431.229 kb on + strand, within GFF1114at 431.229 kb on + strand, within GFF1114at 431.229 kb on + strand, within GFF1114at 431.230 kb on - strand, within GFF1114at 431.230 kb on - strand, within GFF1114at 431.230 kb on - strand, within GFF1114at 431.230 kb on - strand, within GFF1114at 431.361 kb on + strand, within GFF1114at 431.361 kb on + strand, within GFF1114at 431.362 kb on - strand, within GFF1114at 431.448 kb on + strand, within GFF1114at 431.448 kb on + strand, within GFF1114at 431.448 kb on + strand, within GFF1114at 431.449 kb on - strand, within GFF1114at 431.449 kb on - strand, within GFF1114at 431.449 kb on - strand, within GFF1114at 431.533 kb on - strand, within GFF1114at 431.533 kb on - strand, within GFF1114at 431.559 kb on + strand, within GFF1114at 431.718 kb on + strandat 431.718 kb on + strandat 431.718 kb on + strandat 431.718 kb on + strandat 431.719 kb on - strandat 431.719 kb on - strandat 431.719 kb on - strandat 431.790 kb on + strandat 431.887 kb on - strandat 431.916 kb on + strand, within GFF1115at 431.916 kb on + strand, within GFF1115at 431.917 kb on - strand, within GFF1115at 431.917 kb on - strand, within GFF1115at 431.994 kb on + strand, within GFF1115at 431.995 kb on - strand, within GFF1115at 431.995 kb on - strand, within GFF1115at 431.995 kb on - strand, within GFF1115at 431.995 kb on - strand, within GFF1115at 431.995 kb on - strand, within GFF1115at 432.324 kb on + strand, within GFF1115at 432.325 kb on - strand, within GFF1115at 432.325 kb on - strand, within GFF1115at 432.558 kb on + strand, within GFF1115at 432.558 kb on + strand, within GFF1115at 432.558 kb on + strand, within GFF1115at 432.559 kb on - strand, within GFF1115at 432.559 kb on - strand, within GFF1115at 432.559 kb on - strand, within GFF1115at 432.639 kb on + strand, within GFF1115at 432.639 kb on + strand, within GFF1115at 432.639 kb on + strand, within GFF1115at 432.639 kb on + strand, within GFF1115at 432.640 kb on - strand, within GFF1115at 432.732 kb on + strand, within GFF1115at 432.732 kb on + strand, within GFF1115at 432.765 kb on + strand, within GFF1115at 432.765 kb on + strand, within GFF1115at 432.765 kb on + strand, within GFF1115at 432.765 kb on + strand, within GFF1115at 432.765 kb on + strand, within GFF1115at 432.765 kb on + strand, within GFF1115at 432.766 kb on - strand, within GFF1115at 432.766 kb on - strand, within GFF1115at 432.829 kb on - strand, within GFF1115at 432.997 kb on - strandat 433.200 kb on + strand, within GFF1116at 433.200 kb on + strand, within GFF1116at 433.200 kb on + strand, within GFF1116at 433.200 kb on + strand, within GFF1116at 433.201 kb on - strand, within GFF1116at 433.201 kb on - strand, within GFF1116at 433.201 kb on - strand, within GFF1116at 433.201 kb on - strand, within GFF1116at 433.215 kb on + strand, within GFF1116at 433.284 kb on + strand, within GFF1116at 433.284 kb on + strand, within GFF1116at 433.285 kb on - strand, within GFF1116at 433.285 kb on - strand, within GFF1116at 433.285 kb on - strand, within GFF1116at 433.572 kb on + strand, within GFF1116at 433.573 kb on - strand, within GFF1116at 433.573 kb on - strand, within GFF1116at 433.573 kb on - strand, within GFF1116at 433.587 kb on + strand, within GFF1116at 433.588 kb on - strand, within GFF1116at 433.588 kb on - strand, within GFF1116at 433.776 kb on + strand, within GFF1116at 433.776 kb on + strand, within GFF1116at 433.776 kb on + strand, within GFF1116at 433.776 kb on + strand, within GFF1116at 433.777 kb on - strand, within GFF1116at 433.777 kb on - strand, within GFF1116at 433.777 kb on - strand, within GFF1116at 433.777 kb on - strand, within GFF1116at 433.777 kb on - strand, within GFF1116at 433.863 kb on + strand, within GFF1116at 433.863 kb on + strand, within GFF1116at 433.863 kb on + strand, within GFF1116at 433.863 kb on + strand, within GFF1116at 433.863 kb on + strand, within GFF1116at 433.863 kb on + strand, within GFF1116at 433.863 kb on + strand, within GFF1116at 433.863 kb on + strand, within GFF1116at 433.863 kb on + strand, within GFF1116at 433.863 kb on + strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.864 kb on - strand, within GFF1116at 433.899 kb on + strand, within GFF1116at 433.899 kb on + strand, within GFF1116at 433.899 kb on + strand, within GFF1116at 433.899 kb on + strand, within GFF1116at 433.899 kb on + strand, within GFF1116at 433.900 kb on - strand, within GFF1116at 433.900 kb on - strand, within GFF1116at 433.900 kb on - strand, within GFF1116at 433.900 kb on - strand, within GFF1116at 433.968 kb on + strand, within GFF1116at 433.968 kb on + strand, within GFF1116at 433.969 kb on - strand, within GFF1116at 433.969 kb on - strand, within GFF1116at 433.969 kb on - strand, within GFF1116

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
430,849 + -0.8
430,849 + -0.3
430,850 - +0.4
430,850 - -0.4
431,106 + GFF1114 0.27 +1.4
431,106 + GFF1114 0.27 -1.3
431,106 + GFF1114 0.27 +0.0
431,106 + GFF1114 0.27 -2.1
431,106 + GFF1114 0.27 +2.4
431,106 + GFF1114 0.27 -0.5
431,106 + GFF1114 0.27 +1.0
431,106 + GFF1114 0.27 -0.5
431,107 - GFF1114 0.27 -0.3
431,107 - GFF1114 0.27 +0.2
431,107 - GFF1114 0.27 +0.4
431,229 + GFF1114 0.42 +1.0
431,229 + GFF1114 0.42 -0.9
431,229 + GFF1114 0.42 -1.0
431,230 - GFF1114 0.42 -0.2
431,230 - GFF1114 0.42 -0.6
431,230 - GFF1114 0.42 -2.6
431,230 - GFF1114 0.42 +0.1
431,361 + GFF1114 0.57 -0.4
431,361 + GFF1114 0.57 -1.1
431,362 - GFF1114 0.57 -1.3
431,448 + GFF1114 0.68 -1.3
431,448 + GFF1114 0.68 -1.0
431,448 + GFF1114 0.68 +1.8
431,449 - GFF1114 0.68 +2.2
431,449 - GFF1114 0.68 +0.3
431,449 - GFF1114 0.68 -0.3
431,533 - GFF1114 0.78 +0.2
431,533 - GFF1114 0.78 -0.3
431,559 + GFF1114 0.81 +1.2
431,718 + -0.2
431,718 + -0.3
431,718 + -0.2
431,718 + -1.2
431,719 - +0.2
431,719 - -0.2
431,719 - -1.0
431,790 + -0.8
431,887 - +0.7
431,916 + GFF1115 0.10 -0.5
431,916 + GFF1115 0.10 +0.2
431,917 - GFF1115 0.10 -0.1
431,917 - GFF1115 0.10 +0.5
431,994 + GFF1115 0.17 -1.3
431,995 - GFF1115 0.17 +0.2
431,995 - GFF1115 0.17 -0.4
431,995 - GFF1115 0.17 +1.4
431,995 - GFF1115 0.17 +0.2
431,995 - GFF1115 0.17 +0.1
432,324 + GFF1115 0.45 +0.5
432,325 - GFF1115 0.45 -0.6
432,325 - GFF1115 0.45 +0.5
432,558 + GFF1115 0.64 -1.4
432,558 + GFF1115 0.64 +0.6
432,558 + GFF1115 0.64 +0.8
432,559 - GFF1115 0.64 -0.6
432,559 - GFF1115 0.64 +0.5
432,559 - GFF1115 0.64 +0.0
432,639 + GFF1115 0.71 +1.0
432,639 + GFF1115 0.71 -0.4
432,639 + GFF1115 0.71 +0.4
432,639 + GFF1115 0.71 -0.1
432,640 - GFF1115 0.71 -0.8
432,732 + GFF1115 0.79 -0.8
432,732 + GFF1115 0.79 +2.1
432,765 + GFF1115 0.82 +0.4
432,765 + GFF1115 0.82 -0.6
432,765 + GFF1115 0.82 +0.0
432,765 + GFF1115 0.82 -0.8
432,765 + GFF1115 0.82 +0.5
432,765 + GFF1115 0.82 -0.5
432,766 - GFF1115 0.82 +1.3
432,766 - GFF1115 0.82 +0.4
432,829 - GFF1115 0.87 +0.4
432,997 - -1.5
433,200 + GFF1116 0.13 -0.4
433,200 + GFF1116 0.13 -0.9
433,200 + GFF1116 0.13 -0.4
433,200 + GFF1116 0.13 -1.9
433,201 - GFF1116 0.13 +0.4
433,201 - GFF1116 0.13 -0.6
433,201 - GFF1116 0.13 +0.4
433,201 - GFF1116 0.13 -0.2
433,215 + GFF1116 0.14 +0.6
433,284 + GFF1116 0.18 -0.2
433,284 + GFF1116 0.18 -0.4
433,285 - GFF1116 0.18 -0.2
433,285 - GFF1116 0.18 -2.3
433,285 - GFF1116 0.18 +0.1
433,572 + GFF1116 0.36 -1.0
433,573 - GFF1116 0.36 -1.0
433,573 - GFF1116 0.36 -1.1
433,573 - GFF1116 0.36 -0.2
433,587 + GFF1116 0.37 +0.8
433,588 - GFF1116 0.37 -0.9
433,588 - GFF1116 0.37 -1.0
433,776 + GFF1116 0.49 -1.4
433,776 + GFF1116 0.49 -0.1
433,776 + GFF1116 0.49 -0.9
433,776 + GFF1116 0.49 -0.8
433,777 - GFF1116 0.49 +0.4
433,777 - GFF1116 0.49 -0.4
433,777 - GFF1116 0.49 -1.4
433,777 - GFF1116 0.49 +0.2
433,777 - GFF1116 0.49 -0.8
433,863 + GFF1116 0.54 -0.2
433,863 + GFF1116 0.54 +0.8
433,863 + GFF1116 0.54 -0.1
433,863 + GFF1116 0.54 -0.6
433,863 + GFF1116 0.54 -1.1
433,863 + GFF1116 0.54 -0.7
433,863 + GFF1116 0.54 -0.4
433,863 + GFF1116 0.54 -1.3
433,863 + GFF1116 0.54 -1.9
433,863 + GFF1116 0.54 -0.8
433,864 - GFF1116 0.54 -0.7
433,864 - GFF1116 0.54 -0.2
433,864 - GFF1116 0.54 -0.4
433,864 - GFF1116 0.54 -1.2
433,864 - GFF1116 0.54 +1.1
433,864 - GFF1116 0.54 -0.8
433,864 - GFF1116 0.54 -0.7
433,864 - GFF1116 0.54 -0.3
433,864 - GFF1116 0.54 -0.1
433,864 - GFF1116 0.54 -0.2
433,864 - GFF1116 0.54 -0.3
433,864 - GFF1116 0.54 -0.6
433,864 - GFF1116 0.54 +0.4
433,864 - GFF1116 0.54 -0.3
433,864 - GFF1116 0.54 -0.3
433,899 + GFF1116 0.57 +0.9
433,899 + GFF1116 0.57 -0.0
433,899 + GFF1116 0.57 -1.1
433,899 + GFF1116 0.57 +0.2
433,899 + GFF1116 0.57 +1.4
433,900 - GFF1116 0.57 -0.0
433,900 - GFF1116 0.57 -0.5
433,900 - GFF1116 0.57 -1.7
433,900 - GFF1116 0.57 +0.8
433,968 + GFF1116 0.61 -0.6
433,968 + GFF1116 0.61 +0.1
433,969 - GFF1116 0.61 -0.5
433,969 - GFF1116 0.61 -0.2
433,969 - GFF1116 0.61 -0.0

Or see this region's nucleotide sequence