Strain Fitness in Variovorax sp. SCN45 around GFF1099

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1098 and GFF1099 are separated by 19 nucleotidesGFF1099 and GFF1100 overlap by 4 nucleotides GFF1098 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 410,085 to 411,428 GFF1098 GFF1099 - Na+-driven multidrug efflux pump, at 411,448 to 412,800 GFF1099 GFF1100 - Probable inner membrane transmembrane protein, at 412,797 to 414,494 GFF1100 Position (kb) 411 412 413Strain fitness (log2 ratio) -2 -1 0 1 2 3at 410.538 kb on + strand, within GFF1098at 410.538 kb on + strand, within GFF1098at 410.538 kb on + strand, within GFF1098at 410.556 kb on + strand, within GFF1098at 410.556 kb on + strand, within GFF1098at 410.557 kb on - strand, within GFF1098at 410.646 kb on + strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.647 kb on - strand, within GFF1098at 410.827 kb on - strand, within GFF1098at 411.109 kb on - strand, within GFF1098at 411.171 kb on + strand, within GFF1098at 411.171 kb on + strand, within GFF1098at 411.171 kb on + strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.172 kb on - strand, within GFF1098at 411.238 kb on - strand, within GFF1098at 411.238 kb on - strand, within GFF1098at 411.238 kb on - strand, within GFF1098at 411.238 kb on - strand, within GFF1098at 411.238 kb on - strand, within GFF1098at 411.426 kb on + strandat 411.426 kb on + strandat 411.426 kb on + strandat 411.427 kb on - strandat 411.427 kb on - strandat 411.427 kb on - strandat 411.427 kb on - strandat 411.582 kb on - strandat 411.582 kb on - strandat 411.582 kb on - strandat 411.593 kb on + strand, within GFF1099at 411.593 kb on + strand, within GFF1099at 411.593 kb on + strand, within GFF1099at 411.593 kb on + strand, within GFF1099at 411.594 kb on - strand, within GFF1099at 411.594 kb on - strand, within GFF1099at 411.594 kb on - strand, within GFF1099at 411.594 kb on - strand, within GFF1099at 411.594 kb on - strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.632 kb on + strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.633 kb on - strand, within GFF1099at 411.713 kb on + strand, within GFF1099at 411.713 kb on + strand, within GFF1099at 411.713 kb on + strand, within GFF1099at 411.713 kb on + strand, within GFF1099at 411.714 kb on - strand, within GFF1099at 411.714 kb on - strand, within GFF1099at 411.714 kb on - strand, within GFF1099at 411.714 kb on - strand, within GFF1099at 411.773 kb on + strand, within GFF1099at 411.774 kb on - strand, within GFF1099at 411.774 kb on - strand, within GFF1099at 411.774 kb on - strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.950 kb on + strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 411.951 kb on - strand, within GFF1099at 412.151 kb on + strand, within GFF1099at 412.151 kb on + strand, within GFF1099at 412.152 kb on - strand, within GFF1099at 412.152 kb on - strand, within GFF1099at 412.152 kb on - strand, within GFF1099at 412.152 kb on - strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.415 kb on + strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.416 kb on - strand, within GFF1099at 412.523 kb on + strand, within GFF1099at 412.523 kb on + strand, within GFF1099at 412.523 kb on + strand, within GFF1099at 412.523 kb on + strand, within GFF1099at 412.524 kb on - strand, within GFF1099at 412.628 kb on + strand, within GFF1099at 412.628 kb on + strand, within GFF1099at 412.628 kb on + strand, within GFF1099at 412.628 kb on + strand, within GFF1099at 412.628 kb on + strand, within GFF1099at 412.629 kb on - strand, within GFF1099at 412.629 kb on - strand, within GFF1099at 412.629 kb on - strand, within GFF1099at 412.629 kb on - strand, within GFF1099at 412.629 kb on - strand, within GFF1099at 412.629 kb on - strand, within GFF1099at 412.629 kb on - strand, within GFF1099at 412.629 kb on - strand, within GFF1099at 412.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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410,538 + GFF1098 0.34 +0.3
410,538 + GFF1098 0.34 +1.2
410,538 + GFF1098 0.34 -0.6
410,556 + GFF1098 0.35 -0.8
410,556 + GFF1098 0.35 +0.3
410,557 - GFF1098 0.35 -0.2
410,646 + GFF1098 0.42 +0.8
410,647 - GFF1098 0.42 -0.7
410,647 - GFF1098 0.42 -1.3
410,647 - GFF1098 0.42 +1.0
410,647 - GFF1098 0.42 -1.5
410,827 - GFF1098 0.55 -0.5
411,109 - GFF1098 0.76 -0.2
411,171 + GFF1098 0.81 -0.8
411,171 + GFF1098 0.81 +0.5
411,171 + GFF1098 0.81 -0.9
411,172 - GFF1098 0.81 -1.0
411,172 - GFF1098 0.81 +1.8
411,172 - GFF1098 0.81 +2.1
411,172 - GFF1098 0.81 +0.8
411,172 - GFF1098 0.81 -0.1
411,172 - GFF1098 0.81 +0.2
411,172 - GFF1098 0.81 -1.1
411,238 - GFF1098 0.86 -0.1
411,238 - GFF1098 0.86 +0.5
411,238 - GFF1098 0.86 +1.0
411,238 - GFF1098 0.86 -2.0
411,238 - GFF1098 0.86 -0.7
411,426 + -2.1
411,426 + -1.0
411,426 + +0.7
411,427 - -0.9
411,427 - +0.7
411,427 - -0.0
411,427 - -1.1
411,582 - +0.2
411,582 - +2.2
411,582 - +0.8
411,593 + GFF1099 0.11 -1.6
411,593 + GFF1099 0.11 -0.5
411,593 + GFF1099 0.11 -1.2
411,593 + GFF1099 0.11 -0.5
411,594 - GFF1099 0.11 +0.6
411,594 - GFF1099 0.11 -0.3
411,594 - GFF1099 0.11 +1.0
411,594 - GFF1099 0.11 +0.6
411,594 - GFF1099 0.11 +0.7
411,632 + GFF1099 0.14 -0.4
411,632 + GFF1099 0.14 -0.1
411,632 + GFF1099 0.14 +0.4
411,632 + GFF1099 0.14 -0.0
411,632 + GFF1099 0.14 -0.4
411,632 + GFF1099 0.14 -0.2
411,632 + GFF1099 0.14 +1.2
411,633 - GFF1099 0.14 +0.8
411,633 - GFF1099 0.14 +3.2
411,633 - GFF1099 0.14 +0.2
411,633 - GFF1099 0.14 -0.5
411,633 - GFF1099 0.14 +0.3
411,633 - GFF1099 0.14 -0.7
411,633 - GFF1099 0.14 -0.2
411,713 + GFF1099 0.20 +0.5
411,713 + GFF1099 0.20 -0.5
411,713 + GFF1099 0.20 +0.1
411,713 + GFF1099 0.20 +0.8
411,714 - GFF1099 0.20 -0.8
411,714 - GFF1099 0.20 -0.5
411,714 - GFF1099 0.20 +0.3
411,714 - GFF1099 0.20 +0.1
411,773 + GFF1099 0.24 -0.3
411,774 - GFF1099 0.24 -0.5
411,774 - GFF1099 0.24 -0.8
411,774 - GFF1099 0.24 -1.1
411,950 + GFF1099 0.37 -0.5
411,950 + GFF1099 0.37 -0.9
411,950 + GFF1099 0.37 -0.7
411,950 + GFF1099 0.37 +0.4
411,950 + GFF1099 0.37 +0.5
411,950 + GFF1099 0.37 +0.6
411,950 + GFF1099 0.37 +0.6
411,950 + GFF1099 0.37 +1.4
411,950 + GFF1099 0.37 +1.4
411,950 + GFF1099 0.37 +0.2
411,950 + GFF1099 0.37 -0.8
411,950 + GFF1099 0.37 +0.1
411,950 + GFF1099 0.37 +0.4
411,950 + GFF1099 0.37 -1.0
411,950 + GFF1099 0.37 -0.3
411,950 + GFF1099 0.37 -0.5
411,950 + GFF1099 0.37 -0.6
411,950 + GFF1099 0.37 -0.3
411,950 + GFF1099 0.37 -0.4
411,950 + GFF1099 0.37 +1.8
411,950 + GFF1099 0.37 +0.4
411,950 + GFF1099 0.37 -0.2
411,950 + GFF1099 0.37 +1.5
411,950 + GFF1099 0.37 -0.9
411,951 - GFF1099 0.37 +0.6
411,951 - GFF1099 0.37 +1.5
411,951 - GFF1099 0.37 +0.6
411,951 - GFF1099 0.37 +0.9
411,951 - GFF1099 0.37 +2.4
411,951 - GFF1099 0.37 +0.8
411,951 - GFF1099 0.37 -0.0
411,951 - GFF1099 0.37 +0.5
411,951 - GFF1099 0.37 -0.6
411,951 - GFF1099 0.37 +0.7
411,951 - GFF1099 0.37 -0.8
412,151 + GFF1099 0.52 -0.1
412,151 + GFF1099 0.52 +1.0
412,152 - GFF1099 0.52 +1.0
412,152 - GFF1099 0.52 +0.0
412,152 - GFF1099 0.52 -0.1
412,152 - GFF1099 0.52 -0.8
412,415 + GFF1099 0.71 -0.2
412,415 + GFF1099 0.71 -0.4
412,415 + GFF1099 0.71 +0.5
412,415 + GFF1099 0.71 -0.3
412,415 + GFF1099 0.71 -1.7
412,415 + GFF1099 0.71 +1.2
412,416 - GFF1099 0.72 +0.2
412,416 - GFF1099 0.72 -1.7
412,416 - GFF1099 0.72 +0.7
412,416 - GFF1099 0.72 -1.9
412,416 - GFF1099 0.72 -0.0
412,416 - GFF1099 0.72 +1.6
412,416 - GFF1099 0.72 +0.2
412,416 - GFF1099 0.72 -0.1
412,523 + GFF1099 0.79 -1.0
412,523 + GFF1099 0.79 -0.6
412,523 + GFF1099 0.79 +0.8
412,523 + GFF1099 0.79 +1.4
412,524 - GFF1099 0.80 +0.2
412,628 + GFF1099 0.87 +1.0
412,628 + GFF1099 0.87 +0.2
412,628 + GFF1099 0.87 +0.3
412,628 + GFF1099 0.87 +0.8
412,628 + GFF1099 0.87 -0.5
412,629 - GFF1099 0.87 +1.0
412,629 - GFF1099 0.87 -0.2
412,629 - GFF1099 0.87 -0.7
412,629 - GFF1099 0.87 -0.5
412,629 - GFF1099 0.87 -0.1
412,629 - GFF1099 0.87 -0.6
412,629 - GFF1099 0.87 -0.8
412,629 - GFF1099 0.87 +0.5
412,686 - -0.7

Or see this region's nucleotide sequence