Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1084 and GFF1085 are separated by 24 nucleotides GFF1085 and GFF1086 are separated by 114 nucleotides GFF1086 and GFF1087 are separated by 29 nucleotides GFF1087 and GFF1088 are separated by 145 nucleotides
GFF1084 - no description, at 396,672 to 396,824
GFF1084
GFF1085 - no description, at 396,849 to 397,067
GFF1085
GFF1086 - putative Glutathione-regulated potassium-efflux system protein KefB, at 397,182 to 397,445
GFF1086
GFF1087 - Thioredoxin reductase (EC 1.8.1.9), at 397,475 to 399,154
GFF1087
GFF1088 - Putative hemolysin, at 399,300 to 400,184
GFF1088
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -1
0
1
2 at 396.496 kb on + strand at 396.528 kb on + strand at 396.572 kb on - strand at 396.673 kb on + strand at 396.674 kb on - strand at 396.861 kb on + strand at 396.862 kb on - strand at 396.884 kb on + strand, within GFF1085 at 396.916 kb on + strand, within GFF1085 at 396.916 kb on + strand, within GFF1085 at 396.916 kb on + strand, within GFF1085 at 396.916 kb on + strand, within GFF1085 at 396.916 kb on + strand, within GFF1085 at 396.916 kb on + strand, within GFF1085 at 396.916 kb on + strand, within GFF1085 at 396.920 kb on + strand, within GFF1085 at 396.921 kb on - strand, within GFF1085 at 396.931 kb on + strand, within GFF1085 at 396.966 kb on + strand, within GFF1085 at 396.966 kb on + strand, within GFF1085 at 396.967 kb on - strand, within GFF1085 at 397.028 kb on - strand, within GFF1085 at 397.044 kb on + strand, within GFF1085 at 397.080 kb on + strand at 397.081 kb on - strand at 397.081 kb on - strand at 397.137 kb on + strand at 397.137 kb on + strand at 397.138 kb on - strand at 397.138 kb on - strand at 397.141 kb on + strand at 397.142 kb on - strand at 397.142 kb on - strand at 397.165 kb on + strand at 397.165 kb on + strand at 397.165 kb on + strand at 397.166 kb on - strand at 397.396 kb on + strand, within GFF1086 at 397.396 kb on + strand, within GFF1086 at 397.397 kb on - strand, within GFF1086 at 397.397 kb on - strand, within GFF1086 at 397.397 kb on - strand, within GFF1086 at 398.064 kb on + strand, within GFF1087 at 398.182 kb on + strand, within GFF1087 at 398.182 kb on + strand, within GFF1087 at 398.182 kb on + strand, within GFF1087 at 398.182 kb on + strand, within GFF1087 at 398.183 kb on - strand, within GFF1087 at 398.336 kb on + strand, within GFF1087 at 398.466 kb on + strand, within GFF1087 at 398.466 kb on + strand, within GFF1087 at 398.467 kb on - strand, within GFF1087 at 398.467 kb on - strand, within GFF1087 at 398.467 kb on - strand, within GFF1087 at 398.528 kb on - strand, within GFF1087 at 398.584 kb on - strand, within GFF1087 at 398.584 kb on - strand, within GFF1087 at 398.638 kb on - strand, within GFF1087 at 398.644 kb on - strand, within GFF1087 at 398.810 kb on + strand, within GFF1087 at 398.810 kb on + strand, within GFF1087 at 398.811 kb on - strand, within GFF1087 at 399.189 kb on + strand at 399.522 kb on + strand, within GFF1088 at 399.522 kb on + strand, within GFF1088 at 399.655 kb on - strand, within GFF1088 at 399.655 kb on - strand, within GFF1088 at 399.655 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.846 kb on - strand, within GFF1088 at 399.970 kb on - strand, within GFF1088 at 400.054 kb on - strand, within GFF1088
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 396,496 + +1.2 396,528 + +0.1 396,572 - +1.8 396,673 + +0.5 396,674 - +0.1 396,861 + +0.1 396,862 - +0.3 396,884 + GFF1085 0.16 -0.0 396,916 + GFF1085 0.31 -0.5 396,916 + GFF1085 0.31 +0.3 396,916 + GFF1085 0.31 +0.2 396,916 + GFF1085 0.31 +0.4 396,916 + GFF1085 0.31 +1.2 396,916 + GFF1085 0.31 +0.1 396,916 + GFF1085 0.31 +0.1 396,920 + GFF1085 0.32 +1.8 396,921 - GFF1085 0.33 +0.4 396,931 + GFF1085 0.37 -1.0 396,966 + GFF1085 0.53 -0.5 396,966 + GFF1085 0.53 -0.2 396,967 - GFF1085 0.54 -0.4 397,028 - GFF1085 0.82 +0.1 397,044 + GFF1085 0.89 -1.3 397,080 + +0.7 397,081 - +0.3 397,081 - -0.6 397,137 + +1.0 397,137 + +0.1 397,138 - +0.3 397,138 - -0.1 397,141 + +0.2 397,142 - +0.2 397,142 - -0.1 397,165 + -0.0 397,165 + +0.1 397,165 + -0.6 397,166 - +0.8 397,396 + GFF1086 0.81 -1.5 397,396 + GFF1086 0.81 +0.6 397,397 - GFF1086 0.81 -0.7 397,397 - GFF1086 0.81 +1.0 397,397 - GFF1086 0.81 +0.6 398,064 + GFF1087 0.35 -1.4 398,182 + GFF1087 0.42 -0.0 398,182 + GFF1087 0.42 -0.2 398,182 + GFF1087 0.42 +1.4 398,182 + GFF1087 0.42 +0.5 398,183 - GFF1087 0.42 -0.5 398,336 + GFF1087 0.51 +0.4 398,466 + GFF1087 0.59 -0.4 398,466 + GFF1087 0.59 -0.8 398,467 - GFF1087 0.59 -0.1 398,467 - GFF1087 0.59 -1.2 398,467 - GFF1087 0.59 -0.2 398,528 - GFF1087 0.63 +0.4 398,584 - GFF1087 0.66 +0.5 398,584 - GFF1087 0.66 +0.3 398,638 - GFF1087 0.69 +0.0 398,644 - GFF1087 0.70 -0.3 398,810 + GFF1087 0.79 -0.3 398,810 + GFF1087 0.79 +0.9 398,811 - GFF1087 0.80 +0.3 399,189 + +0.1 399,522 + GFF1088 0.25 -0.4 399,522 + GFF1088 0.25 +1.2 399,655 - GFF1088 0.40 -0.7 399,655 - GFF1088 0.40 -0.1 399,655 - GFF1088 0.40 -0.1 399,700 - GFF1088 0.45 +0.5 399,700 - GFF1088 0.45 +0.0 399,700 - GFF1088 0.45 -0.6 399,700 - GFF1088 0.45 +0.1 399,700 - GFF1088 0.45 -0.0 399,700 - GFF1088 0.45 -0.0 399,846 - GFF1088 0.62 -0.7 399,970 - GFF1088 0.76 +0.3 400,054 - GFF1088 0.85 -0.2
Or see this region's nucleotide sequence