Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1074 and GFF1075 are separated by 342 nucleotides GFF1075 and GFF1076 are separated by 234 nucleotides
GFF1074 - no description, at 386,510 to 386,926
GFF1074
GFF1075 - no description, at 387,269 to 387,577
GFF1075
GFF1076 - no description, at 387,812 to 388,174
GFF1076
Position (kb) 386
387 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 385.548 kb on + strand at 385.548 kb on + strand at 385.548 kb on + strand at 385.548 kb on + strand at 385.548 kb on + strand at 385.548 kb on + strand at 385.549 kb on - strand at 385.549 kb on - strand at 385.549 kb on - strand at 385.549 kb on - strand at 385.549 kb on - strand at 385.549 kb on - strand at 385.569 kb on + strand at 385.569 kb on + strand at 385.569 kb on + strand at 385.569 kb on + strand at 385.570 kb on - strand at 385.570 kb on - strand at 385.570 kb on - strand at 385.570 kb on - strand at 385.570 kb on - strand at 385.669 kb on + strand at 385.669 kb on + strand at 385.669 kb on + strand at 385.669 kb on + strand at 385.669 kb on + strand at 385.669 kb on + strand at 385.670 kb on - strand at 385.670 kb on - strand at 385.670 kb on - strand at 385.670 kb on - strand at 385.670 kb on - strand at 385.673 kb on + strand at 385.673 kb on + strand at 385.673 kb on + strand at 385.674 kb on - strand at 385.674 kb on - strand at 385.723 kb on + strand at 385.752 kb on + strand at 385.753 kb on - strand at 385.812 kb on + strand at 385.842 kb on - strand at 385.850 kb on - strand at 385.873 kb on + strand at 385.874 kb on - strand at 385.874 kb on - strand at 385.874 kb on - strand at 385.891 kb on + strand at 385.892 kb on - strand at 385.892 kb on - strand at 385.892 kb on - strand at 385.892 kb on - strand at 385.892 kb on - strand at 385.892 kb on - strand at 385.987 kb on + strand at 385.988 kb on - strand at 386.017 kb on - strand at 386.055 kb on + strand at 386.055 kb on + strand at 386.056 kb on - strand at 386.056 kb on - strand at 386.106 kb on + strand at 386.125 kb on - strand at 386.172 kb on + strand at 386.172 kb on + strand at 386.172 kb on + strand at 386.173 kb on - strand at 386.173 kb on - strand at 386.204 kb on + strand at 386.205 kb on - strand at 386.205 kb on - strand at 386.205 kb on - strand at 386.230 kb on + strand at 386.230 kb on + strand at 386.338 kb on - strand at 386.338 kb on - strand at 386.353 kb on + strand at 386.354 kb on - strand at 386.354 kb on - strand at 386.354 kb on - strand at 386.354 kb on - strand at 386.354 kb on - strand at 386.375 kb on + strand at 386.375 kb on + strand at 386.539 kb on + strand at 386.547 kb on + strand at 386.597 kb on + strand, within GFF1074 at 386.597 kb on + strand, within GFF1074 at 386.597 kb on + strand, within GFF1074 at 386.598 kb on - strand, within GFF1074 at 386.599 kb on + strand, within GFF1074 at 386.599 kb on + strand, within GFF1074 at 386.599 kb on + strand, within GFF1074 at 386.599 kb on + strand, within GFF1074 at 386.599 kb on + strand, within GFF1074 at 386.599 kb on + strand, within GFF1074 at 386.600 kb on - strand, within GFF1074 at 386.600 kb on - strand, within GFF1074 at 386.600 kb on - strand, within GFF1074 at 386.631 kb on + strand, within GFF1074 at 386.631 kb on + strand, within GFF1074 at 386.631 kb on + strand, within GFF1074 at 386.631 kb on + strand, within GFF1074 at 386.631 kb on + strand, within GFF1074 at 386.631 kb on + strand, within GFF1074 at 386.631 kb on + strand, within GFF1074 at 386.631 kb on + strand, within GFF1074 at 386.632 kb on - strand, within GFF1074 at 386.632 kb on - strand, within GFF1074 at 386.632 kb on - strand, within GFF1074 at 386.632 kb on - strand, within GFF1074 at 386.632 kb on - strand, within GFF1074 at 386.682 kb on - strand, within GFF1074 at 386.695 kb on + strand, within GFF1074 at 386.695 kb on + strand, within GFF1074 at 386.695 kb on + strand, within GFF1074 at 386.695 kb on + strand, within GFF1074 at 386.695 kb on + strand, within GFF1074 at 386.695 kb on + strand, within GFF1074 at 386.696 kb on - strand, within GFF1074 at 386.696 kb on - strand, within GFF1074 at 386.696 kb on - strand, within GFF1074 at 386.696 kb on - strand, within GFF1074 at 386.696 kb on - strand, within GFF1074 at 386.696 kb on - strand, within GFF1074 at 386.696 kb on - strand, within GFF1074 at 386.698 kb on - strand, within GFF1074 at 386.808 kb on + strand, within GFF1074 at 386.808 kb on + strand, within GFF1074 at 386.808 kb on + strand, within GFF1074 at 386.808 kb on + strand, within GFF1074 at 386.808 kb on + strand, within GFF1074 at 386.809 kb on - strand, within GFF1074 at 386.809 kb on - strand, within GFF1074 at 386.809 kb on - strand, within GFF1074 at 386.836 kb on + strand, within GFF1074 at 386.836 kb on + strand, within GFF1074 at 386.908 kb on + strand at 386.918 kb on + strand at 386.918 kb on + strand at 386.918 kb on + strand at 386.918 kb on + strand at 386.919 kb on - strand at 386.960 kb on + strand at 386.961 kb on - strand at 386.961 kb on - strand at 387.074 kb on + strand at 387.074 kb on + strand at 387.131 kb on - strand at 387.169 kb on + strand at 387.213 kb on + strand at 387.213 kb on + strand at 387.213 kb on + strand at 387.213 kb on + strand at 387.214 kb on - strand at 387.214 kb on - strand at 387.214 kb on - strand at 387.214 kb on - strand at 387.214 kb on - strand at 387.214 kb on - strand at 387.216 kb on + strand at 387.216 kb on + strand at 387.217 kb on - strand at 387.217 kb on - strand at 387.217 kb on - strand at 387.443 kb on + strand, within GFF1075 at 387.443 kb on + strand, within GFF1075 at 387.443 kb on + strand, within GFF1075 at 387.443 kb on + strand, within GFF1075 at 387.444 kb on - strand, within GFF1075 at 387.447 kb on + strand, within GFF1075 at 387.448 kb on - strand, within GFF1075 at 387.554 kb on - strand at 387.556 kb on + strand at 387.556 kb on + strand at 387.556 kb on + strand at 387.556 kb on + strand at 387.556 kb on + strand at 387.579 kb on - strand at 387.579 kb on - strand at 387.641 kb on + strand at 387.641 kb on + strand at 387.705 kb on - strand at 387.743 kb on - strand at 387.743 kb on - strand at 387.743 kb on - strand at 387.743 kb on - strand at 387.841 kb on - strand at 387.862 kb on - strand, within GFF1076 at 387.862 kb on - strand, within GFF1076 at 387.897 kb on + strand, within GFF1076 at 387.897 kb on + strand, within GFF1076 at 387.897 kb on + strand, within GFF1076 at 387.897 kb on + strand, within GFF1076 at 387.897 kb on + strand, within GFF1076 at 387.898 kb on - strand, within GFF1076
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 385,548 + -0.2 385,548 + -0.7 385,548 + +1.8 385,548 + +0.5 385,548 + -1.3 385,548 + -1.9 385,549 - -0.8 385,549 - -0.5 385,549 - +0.8 385,549 - +0.5 385,549 - -0.3 385,549 - +0.5 385,569 + +0.2 385,569 + +0.0 385,569 + -0.0 385,569 + -0.4 385,570 - +0.7 385,570 - +0.8 385,570 - -0.1 385,570 - +1.0 385,570 - -0.3 385,669 + +0.3 385,669 + -0.6 385,669 + +0.1 385,669 + -0.9 385,669 + -0.6 385,669 + -0.2 385,670 - +2.2 385,670 - +0.4 385,670 - +0.1 385,670 - -0.1 385,670 - -0.4 385,673 + +1.3 385,673 + +0.5 385,673 + -0.3 385,674 - -0.1 385,674 - +0.6 385,723 + -0.5 385,752 + +0.7 385,753 - +0.9 385,812 + -0.2 385,842 - +0.6 385,850 - +0.1 385,873 + +0.4 385,874 - +0.1 385,874 - -0.2 385,874 - +0.3 385,891 + +1.0 385,892 - +0.8 385,892 - -0.0 385,892 - -0.5 385,892 - -0.9 385,892 - +0.8 385,892 - -0.1 385,987 + +0.1 385,988 - -0.1 386,017 - +0.1 386,055 + +1.5 386,055 + +0.6 386,056 - +1.8 386,056 - +0.0 386,106 + +0.6 386,125 - +0.5 386,172 + -0.2 386,172 + +0.5 386,172 + +0.0 386,173 - -1.0 386,173 - +0.5 386,204 + -0.9 386,205 - -0.1 386,205 - -0.6 386,205 - +0.6 386,230 + -0.2 386,230 + +0.8 386,338 - -0.3 386,338 - +1.4 386,353 + -0.4 386,354 - +0.8 386,354 - +0.2 386,354 - +1.8 386,354 - -0.3 386,354 - -0.4 386,375 + -0.2 386,375 + +0.1 386,539 + -0.4 386,547 + +1.4 386,597 + GFF1074 0.21 +0.0 386,597 + GFF1074 0.21 -0.0 386,597 + GFF1074 0.21 +2.8 386,598 - GFF1074 0.21 -0.9 386,599 + GFF1074 0.21 +0.2 386,599 + GFF1074 0.21 -0.0 386,599 + GFF1074 0.21 -1.5 386,599 + GFF1074 0.21 -0.4 386,599 + GFF1074 0.21 +1.2 386,599 + GFF1074 0.21 +0.2 386,600 - GFF1074 0.22 -0.3 386,600 - GFF1074 0.22 -0.0 386,600 - GFF1074 0.22 -0.3 386,631 + GFF1074 0.29 +0.2 386,631 + GFF1074 0.29 +0.8 386,631 + GFF1074 0.29 +1.0 386,631 + GFF1074 0.29 -0.5 386,631 + GFF1074 0.29 -1.1 386,631 + GFF1074 0.29 -0.4 386,631 + GFF1074 0.29 -0.8 386,631 + GFF1074 0.29 +0.1 386,632 - GFF1074 0.29 +1.2 386,632 - GFF1074 0.29 -0.1 386,632 - GFF1074 0.29 +1.0 386,632 - GFF1074 0.29 +0.4 386,632 - GFF1074 0.29 +1.4 386,682 - GFF1074 0.41 +0.9 386,695 + GFF1074 0.44 +0.6 386,695 + GFF1074 0.44 +0.5 386,695 + GFF1074 0.44 -0.3 386,695 + GFF1074 0.44 +0.9 386,695 + GFF1074 0.44 -0.3 386,695 + GFF1074 0.44 +1.3 386,696 - GFF1074 0.45 +0.1 386,696 - GFF1074 0.45 +0.3 386,696 - GFF1074 0.45 -1.7 386,696 - GFF1074 0.45 +0.9 386,696 - GFF1074 0.45 -0.4 386,696 - GFF1074 0.45 -1.0 386,696 - GFF1074 0.45 +0.5 386,698 - GFF1074 0.45 -0.7 386,808 + GFF1074 0.71 -0.2 386,808 + GFF1074 0.71 -0.7 386,808 + GFF1074 0.71 -0.0 386,808 + GFF1074 0.71 -0.2 386,808 + GFF1074 0.71 +0.2 386,809 - GFF1074 0.72 +0.6 386,809 - GFF1074 0.72 +0.3 386,809 - GFF1074 0.72 -1.0 386,836 + GFF1074 0.78 -0.2 386,836 + GFF1074 0.78 -0.4 386,908 + -0.6 386,918 + -0.4 386,918 + -1.2 386,918 + -0.1 386,918 + -0.6 386,919 - +1.5 386,960 + +0.6 386,961 - +0.6 386,961 - -0.3 387,074 + +0.0 387,074 + -0.2 387,131 - -0.4 387,169 + -0.3 387,213 + -0.3 387,213 + -0.2 387,213 + -0.5 387,213 + -0.1 387,214 - -1.3 387,214 - +0.2 387,214 - +0.2 387,214 - -1.2 387,214 - -0.6 387,214 - +1.6 387,216 + +2.8 387,216 + +0.8 387,217 - +1.3 387,217 - -0.1 387,217 - +0.6 387,443 + GFF1075 0.56 -0.2 387,443 + GFF1075 0.56 -0.3 387,443 + GFF1075 0.56 +0.5 387,443 + GFF1075 0.56 +0.2 387,444 - GFF1075 0.57 -0.0 387,447 + GFF1075 0.58 -0.1 387,448 - GFF1075 0.58 -0.4 387,554 - +0.7 387,556 + -2.3 387,556 + +0.2 387,556 + -0.6 387,556 + -0.3 387,556 + +0.3 387,579 - -0.2 387,579 - -0.1 387,641 + -0.2 387,641 + -0.6 387,705 - -1.0 387,743 - -0.4 387,743 - -0.4 387,743 - -1.2 387,743 - +0.7 387,841 - -0.2 387,862 - GFF1076 0.14 +0.9 387,862 - GFF1076 0.14 +0.3 387,897 + GFF1076 0.23 +1.2 387,897 + GFF1076 0.23 -1.4 387,897 + GFF1076 0.23 -0.6 387,897 + GFF1076 0.23 -0.5 387,897 + GFF1076 0.23 +0.9 387,898 - GFF1076 0.24 -0.8
Or see this region's nucleotide sequence