Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1058 and GFF1059 are separated by 11 nucleotides GFF1059 and GFF1060 overlap by 4 nucleotides GFF1060 and GFF1061 overlap by 22 nucleotides GFF1061 and GFF1062 overlap by 1 nucleotides
GFF1058 - Pyrimidine ABC transporter, substrate-binding component, at 372,324 to 373,331
GFF1058
GFF1059 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 373,343 to 374,194
GFF1059
GFF1060 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,191 to 374,949
GFF1060
GFF1061 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,928 to 375,686
GFF1061
GFF1062 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 375,686 to 376,462
GFF1062
Position (kb) 374
375 Strain fitness (log2 ratio) -1
0
1
2 at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.281 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.267 kb on - strand, within GFF1060 at 374.296 kb on + strand, within GFF1060 at 374.443 kb on + strand, within GFF1060 at 374.443 kb on + strand, within GFF1060 at 374.444 kb on - strand, within GFF1060 at 375.141 kb on + strand, within GFF1061 at 375.248 kb on + strand, within GFF1061 at 375.249 kb on - strand, within GFF1061 at 375.259 kb on - strand, within GFF1061 at 375.561 kb on + strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.761 kb on + strand at 375.800 kb on + strand, within GFF1062 at 375.800 kb on + strand, within GFF1062 at 375.801 kb on - strand, within GFF1062 at 375.801 kb on - strand, within GFF1062
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 373,242 + -0.2 373,242 + +1.8 373,242 + -0.6 373,242 + +0.1 373,242 + +1.6 373,242 + -1.5 373,281 + -0.3 374,266 + -0.5 374,266 + -0.4 374,266 + +0.7 374,266 + +0.5 374,266 + +0.7 374,266 + +0.2 374,267 - GFF1060 0.10 +1.4 374,296 + GFF1060 0.14 -0.2 374,443 + GFF1060 0.33 +0.5 374,443 + GFF1060 0.33 +0.4 374,444 - GFF1060 0.33 -1.7 375,141 + GFF1061 0.28 -0.7 375,248 + GFF1061 0.42 +0.8 375,249 - GFF1061 0.42 -0.5 375,259 - GFF1061 0.44 -0.0 375,561 + GFF1061 0.83 -0.2 375,562 - GFF1061 0.84 +0.9 375,562 - GFF1061 0.84 -0.6 375,562 - GFF1061 0.84 +0.0 375,562 - GFF1061 0.84 +0.1 375,562 - GFF1061 0.84 -0.1 375,761 + +2.1 375,800 + GFF1062 0.15 -0.4 375,800 + GFF1062 0.15 -0.1 375,801 - GFF1062 0.15 +0.6 375,801 - GFF1062 0.15 -0.5
Or see this region's nucleotide sequence