Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF104 and GFF105 are separated by 23 nucleotides GFF105 and GFF106 overlap by 4 nucleotides GFF106 and GFF107 overlap by 4 nucleotides
GFF104 - General secretion pathway protein D, at 130,561 to 133,152
GFF104
GFF105 - hypothetical protein, at 133,176 to 133,748
GFF105
GFF106 - no description, at 133,745 to 134,890
GFF106
GFF107 - General secretion pathway protein K, at 134,887 to 135,846
GFF107
Position (kb) 133
134
135 Strain fitness (log2 ratio) -1
0
1 at 133.192 kb on + strand at 133.192 kb on + strand at 133.193 kb on - strand at 133.784 kb on - strand at 133.930 kb on - strand, within GFF106 at 134.087 kb on + strand, within GFF106 at 134.088 kb on - strand, within GFF106 at 134.166 kb on + strand, within GFF106 at 134.166 kb on + strand, within GFF106 at 134.167 kb on - strand, within GFF106 at 134.338 kb on + strand, within GFF106 at 134.440 kb on + strand, within GFF106 at 134.440 kb on + strand, within GFF106 at 134.440 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.777 kb on - strand at 135.623 kb on + strand, within GFF107 at 135.623 kb on + strand, within GFF107
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 133,192 + +0.3 133,192 + -0.1 133,193 - +0.5 133,784 - +0.1 133,930 - GFF106 0.16 -0.3 134,087 + GFF106 0.30 -1.6 134,088 - GFF106 0.30 -0.1 134,166 + GFF106 0.37 +0.6 134,166 + GFF106 0.37 -0.1 134,167 - GFF106 0.37 +0.3 134,338 + GFF106 0.52 -0.5 134,440 + GFF106 0.61 -1.6 134,440 + GFF106 0.61 -0.4 134,440 + GFF106 0.61 +1.1 134,723 + GFF106 0.85 +1.1 134,723 + GFF106 0.85 +1.6 134,723 + GFF106 0.85 +0.9 134,723 + GFF106 0.85 +0.3 134,777 - -0.1 135,623 + GFF107 0.77 -1.5 135,623 + GFF107 0.77 -0.0
Or see this region's nucleotide sequence