Strain Fitness in Variovorax sp. SCN45 around GFF1055

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1054 and GFF1055 are separated by 46 nucleotidesGFF1055 and GFF1056 are separated by 21 nucleotidesGFF1056 and GFF1057 are separated by 79 nucleotides GFF1054 - Catechol 2,3-dioxygenase (EC 1.13.11.2), at 368,436 to 369,419 GFF1054 GFF1055 - Fumarylacetoacetate hydrolase family protein, at 369,466 to 370,326 GFF1055 GFF1056 - hypothetical protein, at 370,348 to 370,662 GFF1056 GFF1057 - hypothetical protein, at 370,742 to 372,184 GFF1057 Position (kb) 369 370 371Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 368.553 kb on + strand, within GFF1054at 368.553 kb on + strand, within GFF1054at 368.553 kb on + strand, within GFF1054at 368.553 kb on + strand, within GFF1054at 368.553 kb on + strand, within GFF1054at 368.554 kb on - strand, within GFF1054at 368.554 kb on - strand, within GFF1054at 368.554 kb on - strand, within GFF1054at 368.604 kb on + strand, within GFF1054at 368.604 kb on + strand, within GFF1054at 368.604 kb on + strand, within GFF1054at 368.605 kb on - strand, within GFF1054at 368.670 kb on + strand, within GFF1054at 368.670 kb on + strand, within GFF1054at 368.670 kb on + strand, within GFF1054at 368.670 kb on + strand, within GFF1054at 368.670 kb on + strand, within GFF1054at 368.671 kb on - strand, within GFF1054at 368.671 kb on - strand, within GFF1054at 368.671 kb on - strand, within GFF1054at 368.914 kb on + strand, within GFF1054at 368.988 kb on + strand, within GFF1054at 368.988 kb on + strand, within GFF1054at 368.989 kb on - strand, within GFF1054at 369.228 kb on + strand, within GFF1054at 369.228 kb on + strand, within GFF1054at 369.228 kb on + strand, within GFF1054at 369.229 kb on - strand, within GFF1054at 369.237 kb on + strand, within GFF1054at 369.237 kb on + strand, within GFF1054at 369.238 kb on - strand, within GFF1054at 369.238 kb on - strand, within GFF1054at 369.238 kb on - strand, within GFF1054at 369.238 kb on - strand, within GFF1054at 369.238 kb on - strand, within GFF1054at 369.238 kb on - strand, within GFF1054at 369.238 kb on - strand, within GFF1054at 369.261 kb on + strand, within GFF1054at 369.261 kb on + strand, within GFF1054at 369.261 kb on + strand, within GFF1054at 369.262 kb on - strand, within GFF1054at 369.262 kb on - strand, within GFF1054at 369.270 kb on + strand, within GFF1054at 369.270 kb on + strand, within GFF1054at 369.271 kb on - strand, within GFF1054at 369.271 kb on - strand, within GFF1054at 369.271 kb on - strand, within GFF1054at 369.345 kb on + strandat 369.345 kb on + strandat 369.345 kb on + strandat 369.345 kb on + strandat 369.345 kb on + strandat 369.345 kb on + strandat 369.345 kb on + strandat 369.346 kb on - strandat 369.346 kb on - strandat 369.346 kb on - strandat 369.346 kb on - strandat 369.417 kb on + strandat 369.417 kb on + strandat 369.418 kb on - strandat 369.456 kb on - strandat 369.712 kb on + strand, within GFF1055at 369.712 kb on + strand, within GFF1055at 369.712 kb on + strand, within GFF1055at 369.713 kb on - strand, within GFF1055at 369.713 kb on - strand, within GFF1055at 369.713 kb on - strand, within GFF1055at 369.713 kb on - strand, within GFF1055at 369.713 kb on - strand, within GFF1055at 369.754 kb on + strand, within GFF1055at 369.754 kb on + strand, within GFF1055at 369.841 kb on + strand, within GFF1055at 369.842 kb on - strand, within GFF1055at 369.883 kb on + strand, within GFF1055at 369.883 kb on + strand, within GFF1055at 369.883 kb on + strand, within GFF1055at 369.883 kb on + strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.884 kb on - strand, within GFF1055at 369.955 kb on + strand, within GFF1055at 369.955 kb on + strand, within GFF1055at 369.955 kb on + strand, within GFF1055at 369.956 kb on - strand, within GFF1055at 370.327 kb on + strandat 370.328 kb on - strandat 370.328 kb on - strandat 370.328 kb on - strandat 370.328 kb on - strandat 370.328 kb on - strandat 370.573 kb on + strand, within GFF1056at 370.573 kb on + strand, within GFF1056at 370.573 kb on + strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.574 kb on - strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.592 kb on + strand, within GFF1056at 370.593 kb on - strand, within GFF1056at 370.593 kb on - strand, within GFF1056at 370.593 kb on - strand, within GFF1056at 370.593 kb on - strand, within GFF1056at 370.668 kb on + strandat 370.668 kb on + strandat 370.668 kb on + strandat 370.669 kb on - strandat 370.669 kb on - strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.720 kb on + strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.721 kb on - strandat 370.950 kb on + strand, within GFF1057at 370.950 kb on + strand, within GFF1057at 370.951 kb on - strand, within GFF1057at 370.951 kb on - strand, within GFF1057at 370.951 kb on - strand, within GFF1057at 371.124 kb on + strand, within GFF1057at 371.124 kb on + strand, within GFF1057at 371.125 kb on - strand, within GFF1057at 371.125 kb on - strand, within GFF1057at 371.244 kb on + strand, within GFF1057at 371.245 kb on - strand, within GFF1057at 371.304 kb on - strand, within GFF1057at 371.304 kb on - strand, within GFF1057

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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368,553 + GFF1054 0.12 -1.0
368,553 + GFF1054 0.12 -0.3
368,553 + GFF1054 0.12 +0.2
368,553 + GFF1054 0.12 -1.2
368,553 + GFF1054 0.12 -1.4
368,554 - GFF1054 0.12 +0.0
368,554 - GFF1054 0.12 -0.1
368,554 - GFF1054 0.12 +0.2
368,604 + GFF1054 0.17 -0.6
368,604 + GFF1054 0.17 -0.7
368,604 + GFF1054 0.17 -0.2
368,605 - GFF1054 0.17 +0.5
368,670 + GFF1054 0.24 -1.1
368,670 + GFF1054 0.24 +1.0
368,670 + GFF1054 0.24 -2.1
368,670 + GFF1054 0.24 -0.6
368,670 + GFF1054 0.24 -1.5
368,671 - GFF1054 0.24 +0.3
368,671 - GFF1054 0.24 +0.1
368,671 - GFF1054 0.24 -0.3
368,914 + GFF1054 0.49 -0.2
368,988 + GFF1054 0.56 -0.6
368,988 + GFF1054 0.56 -1.7
368,989 - GFF1054 0.56 -0.1
369,228 + GFF1054 0.80 -0.6
369,228 + GFF1054 0.80 -0.6
369,228 + GFF1054 0.80 -0.1
369,229 - GFF1054 0.81 -1.3
369,237 + GFF1054 0.81 +0.5
369,237 + GFF1054 0.81 +0.2
369,238 - GFF1054 0.82 -0.8
369,238 - GFF1054 0.82 +1.8
369,238 - GFF1054 0.82 -1.6
369,238 - GFF1054 0.82 +1.1
369,238 - GFF1054 0.82 -0.8
369,238 - GFF1054 0.82 -0.1
369,238 - GFF1054 0.82 -0.9
369,261 + GFF1054 0.84 +0.1
369,261 + GFF1054 0.84 +0.0
369,261 + GFF1054 0.84 +0.6
369,262 - GFF1054 0.84 -2.0
369,262 - GFF1054 0.84 +0.1
369,270 + GFF1054 0.85 +1.4
369,270 + GFF1054 0.85 +0.0
369,271 - GFF1054 0.85 -1.1
369,271 - GFF1054 0.85 -1.1
369,271 - GFF1054 0.85 +1.8
369,345 + +0.6
369,345 + -0.1
369,345 + -1.2
369,345 + +1.8
369,345 + -0.0
369,345 + -0.2
369,345 + +0.3
369,346 - +0.2
369,346 - -0.4
369,346 - +0.3
369,346 - -0.1
369,417 + +0.8
369,417 + +0.8
369,418 - +0.3
369,456 - +0.1
369,712 + GFF1055 0.29 +0.6
369,712 + GFF1055 0.29 -0.8
369,712 + GFF1055 0.29 +0.3
369,713 - GFF1055 0.29 +0.2
369,713 - GFF1055 0.29 -0.5
369,713 - GFF1055 0.29 -0.4
369,713 - GFF1055 0.29 +1.0
369,713 - GFF1055 0.29 -0.8
369,754 + GFF1055 0.33 +1.8
369,754 + GFF1055 0.33 -0.1
369,841 + GFF1055 0.44 -0.9
369,842 - GFF1055 0.44 -0.0
369,883 + GFF1055 0.48 -0.1
369,883 + GFF1055 0.48 +0.3
369,883 + GFF1055 0.48 -1.8
369,883 + GFF1055 0.48 -0.4
369,884 - GFF1055 0.49 -0.2
369,884 - GFF1055 0.49 +0.2
369,884 - GFF1055 0.49 -0.2
369,884 - GFF1055 0.49 +0.2
369,884 - GFF1055 0.49 +0.5
369,884 - GFF1055 0.49 +0.8
369,884 - GFF1055 0.49 +0.7
369,955 + GFF1055 0.57 +1.1
369,955 + GFF1055 0.57 -1.1
369,955 + GFF1055 0.57 +1.0
369,956 - GFF1055 0.57 -0.4
370,327 + +0.2
370,328 - +1.1
370,328 - -0.2
370,328 - -0.1
370,328 - +1.1
370,328 - +0.3
370,573 + GFF1056 0.71 +0.5
370,573 + GFF1056 0.71 -0.1
370,573 + GFF1056 0.71 +1.4
370,574 - GFF1056 0.72 -0.9
370,574 - GFF1056 0.72 +0.1
370,574 - GFF1056 0.72 +0.2
370,574 - GFF1056 0.72 +0.8
370,574 - GFF1056 0.72 -0.2
370,574 - GFF1056 0.72 -0.0
370,574 - GFF1056 0.72 +0.5
370,592 + GFF1056 0.77 +0.4
370,592 + GFF1056 0.77 +0.1
370,592 + GFF1056 0.77 -0.4
370,592 + GFF1056 0.77 -0.8
370,592 + GFF1056 0.77 +1.2
370,592 + GFF1056 0.77 -1.1
370,593 - GFF1056 0.78 +1.3
370,593 - GFF1056 0.78 -0.4
370,593 - GFF1056 0.78 +0.1
370,593 - GFF1056 0.78 +0.3
370,668 + +0.2
370,668 + -0.3
370,668 + +0.1
370,669 - +0.6
370,669 - -1.6
370,720 + +1.6
370,720 + -0.2
370,720 + -0.8
370,720 + -0.5
370,720 + +0.8
370,720 + -0.7
370,720 + -0.2
370,720 + +0.5
370,720 + +0.3
370,720 + +0.3
370,720 + +0.6
370,720 + +0.4
370,720 + +0.5
370,720 + +1.0
370,720 + -0.1
370,721 - -0.1
370,721 - -0.6
370,721 - -0.1
370,721 - -0.1
370,721 - -0.2
370,721 - +0.8
370,721 - +2.0
370,721 - +0.2
370,721 - -0.8
370,721 - +0.3
370,721 - -0.4
370,721 - -0.4
370,721 - +0.2
370,721 - -1.5
370,721 - -1.1
370,721 - -0.0
370,721 - -0.5
370,721 - -0.8
370,950 + GFF1057 0.14 -0.1
370,950 + GFF1057 0.14 -0.3
370,951 - GFF1057 0.14 -0.1
370,951 - GFF1057 0.14 -0.3
370,951 - GFF1057 0.14 -0.3
371,124 + GFF1057 0.26 -0.5
371,124 + GFF1057 0.26 +0.5
371,125 - GFF1057 0.27 -0.9
371,125 - GFF1057 0.27 -0.1
371,244 + GFF1057 0.35 +0.8
371,245 - GFF1057 0.35 -2.8
371,304 - GFF1057 0.39 +0.0
371,304 - GFF1057 0.39 +0.9

Or see this region's nucleotide sequence