Strain Fitness in Variovorax sp. SCN45 around GFF1045

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1042 and GFF1044 are separated by 13 nucleotidesGFF1044 and GFF1045 are separated by 31 nucleotidesGFF1045 and GFF1046 are separated by 89 nucleotides GFF1042 - Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18), at 358,845 to 359,453 GFF1042 GFF1044 - hypothetical protein, at 359,467 to 359,856 GFF1044 GFF1045 - Putative phosphatase, at 359,888 to 361,765 GFF1045 GFF1046 - Enoyl-CoA hydratase/isomerase, at 361,855 to 362,679 GFF1046 Position (kb) 359 360 361 362Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 359.166 kb on + strand, within GFF1042at 359.166 kb on + strand, within GFF1042at 359.166 kb on + strand, within GFF1042at 359.167 kb on - strand, within GFF1042at 359.244 kb on + strand, within GFF1042at 359.245 kb on - strand, within GFF1042at 359.400 kb on + strandat 359.400 kb on + strandat 359.546 kb on + strand, within GFF1044at 359.546 kb on + strand, within GFF1044at 359.546 kb on + strand, within GFF1044at 359.546 kb on + strand, within GFF1044at 359.546 kb on + strand, within GFF1044at 359.546 kb on + strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.724 kb on - strand, within GFF1044at 359.724 kb on - strand, within GFF1044at 359.735 kb on + strand, within GFF1044at 359.735 kb on + strand, within GFF1044at 359.736 kb on - strand, within GFF1044at 360.168 kb on + strand, within GFF1045at 360.168 kb on + strand, within GFF1045at 360.168 kb on + strand, within GFF1045at 360.168 kb on + strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.282 kb on + strand, within GFF1045at 360.480 kb on + strand, within GFF1045at 360.480 kb on + strand, within GFF1045at 360.480 kb on + strand, within GFF1045at 360.480 kb on + strand, within GFF1045at 360.480 kb on + strand, within GFF1045at 360.481 kb on - strand, within GFF1045at 360.481 kb on - strand, within GFF1045at 360.481 kb on - strand, within GFF1045at 360.481 kb on - strand, within GFF1045at 360.481 kb on - strand, within GFF1045at 360.667 kb on - strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.679 kb on - strand, within GFF1045at 360.679 kb on - strand, within GFF1045at 360.679 kb on - strand, within GFF1045at 360.679 kb on - strand, within GFF1045at 360.679 kb on - strand, within GFF1045at 360.689 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.774 kb on + strand, within GFF1045at 360.774 kb on + strand, within GFF1045at 360.774 kb on + strand, within GFF1045at 360.774 kb on + strand, within GFF1045at 360.775 kb on - strand, within GFF1045at 360.775 kb on - strand, within GFF1045at 360.775 kb on - strand, within GFF1045at 360.775 kb on - strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.984 kb on + strand, within GFF1045at 361.071 kb on + strand, within GFF1045at 361.101 kb on + strand, within GFF1045at 361.101 kb on + strand, within GFF1045at 361.101 kb on + strand, within GFF1045at 361.101 kb on + strand, within GFF1045at 361.101 kb on + strand, within GFF1045at 361.102 kb on - strand, within GFF1045at 361.102 kb on - strand, within GFF1045at 361.102 kb on - strand, within GFF1045at 361.102 kb on - strand, within GFF1045at 361.102 kb on - strand, within GFF1045at 361.102 kb on - strand, within GFF1045at 361.102 kb on - strand, within GFF1045at 361.102 kb on - strand, within GFF1045at 361.395 kb on + strand, within GFF1045at 361.395 kb on + strand, within GFF1045at 361.396 kb on - strand, within GFF1045at 361.575 kb on + strand, within GFF1045at 361.576 kb on - strand, within GFF1045at 361.576 kb on - strand, within GFF1045at 361.576 kb on - strand, within GFF1045at 361.593 kb on + strandat 361.593 kb on + strandat 361.594 kb on - strandat 361.594 kb on - strandat 361.594 kb on - strandat 361.782 kb on + strandat 361.782 kb on + strandat 361.782 kb on + strandat 361.782 kb on + strandat 361.782 kb on + strandat 361.782 kb on + strandat 361.783 kb on - strandat 361.783 kb on - strandat 361.783 kb on - strandat 361.783 kb on - strandat 361.783 kb on - strandat 361.783 kb on - strandat 361.783 kb on - strandat 361.824 kb on + strandat 361.824 kb on + strandat 361.825 kb on - strandat 361.867 kb on - strandat 362.621 kb on + strandat 362.621 kb on + strandat 362.621 kb on + strandat 362.621 kb on + strandat 362.621 kb on + strandat 362.621 kb on + strandat 362.621 kb on + strandat 362.621 kb on + strandat 362.622 kb on - strandat 362.622 kb on - strandat 362.622 kb on - strandat 362.686 kb on - strandat 362.744 kb on + strandat 362.744 kb on + strandat 362.744 kb on + strandat 362.744 kb on + strandat 362.744 kb on + strandat 362.744 kb on + strandat 362.744 kb on + strandat 362.744 kb on + strandat 362.744 kb on + strandat 362.744 kb on + strandat 362.744 kb on + strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strandat 362.745 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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359,166 + GFF1042 0.53 -1.0
359,166 + GFF1042 0.53 +0.5
359,166 + GFF1042 0.53 +0.1
359,167 - GFF1042 0.53 +0.1
359,244 + GFF1042 0.66 +0.7
359,245 - GFF1042 0.66 -1.0
359,400 + -0.8
359,400 + -0.7
359,546 + GFF1044 0.20 -0.2
359,546 + GFF1044 0.20 -0.5
359,546 + GFF1044 0.20 -0.3
359,546 + GFF1044 0.20 -0.6
359,546 + GFF1044 0.20 -0.4
359,546 + GFF1044 0.20 -0.3
359,547 - GFF1044 0.21 -1.0
359,547 - GFF1044 0.21 -1.9
359,547 - GFF1044 0.21 -0.3
359,547 - GFF1044 0.21 -0.4
359,547 - GFF1044 0.21 -1.6
359,547 - GFF1044 0.21 +1.8
359,547 - GFF1044 0.21 -0.5
359,724 - GFF1044 0.66 -0.0
359,724 - GFF1044 0.66 -0.7
359,735 + GFF1044 0.69 +0.2
359,735 + GFF1044 0.69 -0.6
359,736 - GFF1044 0.69 +0.4
360,168 + GFF1045 0.15 -0.2
360,168 + GFF1045 0.15 -0.0
360,168 + GFF1045 0.15 -0.0
360,168 + GFF1045 0.15 +0.6
360,169 - GFF1045 0.15 -1.0
360,169 - GFF1045 0.15 -0.7
360,169 - GFF1045 0.15 -0.3
360,169 - GFF1045 0.15 +0.2
360,169 - GFF1045 0.15 +1.2
360,169 - GFF1045 0.15 +0.0
360,169 - GFF1045 0.15 +0.3
360,169 - GFF1045 0.15 -0.8
360,282 + GFF1045 0.21 -0.1
360,480 + GFF1045 0.32 -0.6
360,480 + GFF1045 0.32 +0.0
360,480 + GFF1045 0.32 -1.0
360,480 + GFF1045 0.32 -0.3
360,480 + GFF1045 0.32 +0.4
360,481 - GFF1045 0.32 -2.0
360,481 - GFF1045 0.32 -1.2
360,481 - GFF1045 0.32 +1.4
360,481 - GFF1045 0.32 -0.8
360,481 - GFF1045 0.32 -0.6
360,667 - GFF1045 0.41 -0.8
360,678 + GFF1045 0.42 -0.0
360,678 + GFF1045 0.42 -0.0
360,678 + GFF1045 0.42 -1.0
360,678 + GFF1045 0.42 -0.5
360,678 + GFF1045 0.42 -2.3
360,678 + GFF1045 0.42 -1.7
360,678 + GFF1045 0.42 -0.8
360,678 + GFF1045 0.42 +2.4
360,679 - GFF1045 0.42 -0.4
360,679 - GFF1045 0.42 -1.4
360,679 - GFF1045 0.42 -1.0
360,679 - GFF1045 0.42 -0.4
360,679 - GFF1045 0.42 +0.8
360,689 + GFF1045 0.43 +0.5
360,768 + GFF1045 0.47 -0.4
360,768 + GFF1045 0.47 -0.6
360,768 + GFF1045 0.47 +0.2
360,768 + GFF1045 0.47 -0.2
360,768 + GFF1045 0.47 +0.5
360,768 + GFF1045 0.47 -0.9
360,768 + GFF1045 0.47 +0.1
360,768 + GFF1045 0.47 -0.6
360,768 + GFF1045 0.47 +0.1
360,768 + GFF1045 0.47 +0.4
360,768 + GFF1045 0.47 -0.5
360,768 + GFF1045 0.47 -0.5
360,768 + GFF1045 0.47 -0.2
360,768 + GFF1045 0.47 +0.4
360,769 - GFF1045 0.47 +0.2
360,769 - GFF1045 0.47 -1.0
360,769 - GFF1045 0.47 +0.2
360,769 - GFF1045 0.47 +0.2
360,769 - GFF1045 0.47 +0.8
360,769 - GFF1045 0.47 -0.2
360,769 - GFF1045 0.47 -1.2
360,769 - GFF1045 0.47 -1.1
360,769 - GFF1045 0.47 -0.7
360,774 + GFF1045 0.47 +0.8
360,774 + GFF1045 0.47 +0.4
360,774 + GFF1045 0.47 -0.8
360,774 + GFF1045 0.47 +1.0
360,775 - GFF1045 0.47 -2.3
360,775 - GFF1045 0.47 +0.4
360,775 - GFF1045 0.47 -0.6
360,775 - GFF1045 0.47 +0.0
360,801 + GFF1045 0.49 +0.5
360,801 + GFF1045 0.49 -0.6
360,801 + GFF1045 0.49 +0.5
360,801 + GFF1045 0.49 -0.8
360,801 + GFF1045 0.49 +0.8
360,801 + GFF1045 0.49 -0.8
360,801 + GFF1045 0.49 +0.8
360,802 - GFF1045 0.49 -1.2
360,802 - GFF1045 0.49 -0.4
360,802 - GFF1045 0.49 +0.2
360,802 - GFF1045 0.49 -0.9
360,802 - GFF1045 0.49 +0.4
360,802 - GFF1045 0.49 -1.8
360,802 - GFF1045 0.49 -0.8
360,984 + GFF1045 0.58 -0.1
361,071 + GFF1045 0.63 -0.3
361,101 + GFF1045 0.65 +0.4
361,101 + GFF1045 0.65 -0.9
361,101 + GFF1045 0.65 -0.6
361,101 + GFF1045 0.65 -0.7
361,101 + GFF1045 0.65 -0.1
361,102 - GFF1045 0.65 -0.5
361,102 - GFF1045 0.65 -1.0
361,102 - GFF1045 0.65 +0.1
361,102 - GFF1045 0.65 +0.6
361,102 - GFF1045 0.65 -0.9
361,102 - GFF1045 0.65 -0.6
361,102 - GFF1045 0.65 +0.2
361,102 - GFF1045 0.65 +0.0
361,395 + GFF1045 0.80 -1.0
361,395 + GFF1045 0.80 -1.1
361,396 - GFF1045 0.80 +0.3
361,575 + GFF1045 0.90 +0.4
361,576 - GFF1045 0.90 -0.8
361,576 - GFF1045 0.90 -0.5
361,576 - GFF1045 0.90 -0.6
361,593 + -0.6
361,593 + -0.8
361,594 - -2.0
361,594 - -0.3
361,594 - -0.1
361,782 + +0.6
361,782 + -0.6
361,782 + -1.4
361,782 + +0.4
361,782 + -1.6
361,782 + -0.2
361,783 - +0.1
361,783 - -0.0
361,783 - +0.5
361,783 - -0.9
361,783 - -0.6
361,783 - -0.2
361,783 - +1.1
361,824 + -0.2
361,824 + -0.1
361,825 - +0.2
361,867 - -0.3
362,621 + +0.2
362,621 + +0.3
362,621 + -0.6
362,621 + +0.3
362,621 + +4.1
362,621 + -0.2
362,621 + -0.0
362,621 + -0.0
362,622 - +0.8
362,622 - -0.4
362,622 - +0.4
362,686 - -0.1
362,744 + +0.1
362,744 + +0.2
362,744 + +1.8
362,744 + +0.1
362,744 + -0.9
362,744 + +0.5
362,744 + -1.2
362,744 + -0.4
362,744 + -0.0
362,744 + +0.5
362,744 + +1.6
362,745 - -0.2
362,745 - -0.6
362,745 - -1.6
362,745 - -0.6
362,745 - +0.0
362,745 - +0.2
362,745 - -0.6
362,745 - -1.1
362,745 - +2.4
362,745 - -0.0
362,745 - -0.6
362,745 - -0.1
362,745 - -1.7
362,745 - -0.9
362,745 - -1.2
362,745 - -0.5
362,745 - +0.2
362,745 - -1.4
362,745 - +2.5
362,745 - -0.3
362,745 - -0.9

Or see this region's nucleotide sequence