Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1028 and GFF1029 are separated by 117 nucleotides GFF1029 and GFF1030 are separated by 146 nucleotides GFF1030 and GFF1031 are separated by 84 nucleotides GFF1031 and GFF1032 are separated by 46 nucleotides
GFF1028 - FIG027190: Putative transmembrane protein, at 343,194 to 343,754
GFF1028
GFF1029 - CHRD domain containing protein, at 343,872 to 344,321
GFF1029
GFF1030 - Ferredoxin reductase, at 344,468 to 345,598
GFF1030
GFF1031 - Acetoacetate decarboxylase (EC 4.1.1.4), at 345,683 to 346,432
GFF1031
GFF1032 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 346,479 to 347,261
GFF1032
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 343.833 kb on + strand at 343.833 kb on + strand at 343.833 kb on + strand at 343.833 kb on + strand at 343.834 kb on - strand at 343.834 kb on - strand at 343.834 kb on - strand at 343.864 kb on + strand at 343.864 kb on + strand at 343.864 kb on + strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 344.076 kb on + strand, within GFF1029 at 344.076 kb on + strand, within GFF1029 at 344.076 kb on + strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.253 kb on + strand, within GFF1029 at 344.253 kb on + strand, within GFF1029 at 344.253 kb on + strand, within GFF1029 at 344.254 kb on - strand, within GFF1029 at 344.254 kb on - strand, within GFF1029 at 344.522 kb on + strand at 344.522 kb on + strand at 344.522 kb on + strand at 344.789 kb on + strand, within GFF1030 at 344.834 kb on + strand, within GFF1030 at 344.834 kb on + strand, within GFF1030 at 344.834 kb on + strand, within GFF1030 at 344.835 kb on - strand, within GFF1030 at 344.835 kb on - strand, within GFF1030 at 344.835 kb on - strand, within GFF1030 at 344.837 kb on + strand, within GFF1030 at 344.837 kb on + strand, within GFF1030 at 344.837 kb on + strand, within GFF1030 at 344.837 kb on + strand, within GFF1030 at 344.837 kb on + strand, within GFF1030 at 344.837 kb on + strand, within GFF1030 at 344.837 kb on + strand, within GFF1030 at 344.838 kb on - strand, within GFF1030 at 344.838 kb on - strand, within GFF1030 at 344.838 kb on - strand, within GFF1030 at 344.954 kb on + strand, within GFF1030 at 344.954 kb on + strand, within GFF1030 at 344.955 kb on - strand, within GFF1030 at 344.955 kb on - strand, within GFF1030 at 344.955 kb on - strand, within GFF1030 at 344.955 kb on - strand, within GFF1030 at 345.053 kb on + strand, within GFF1030 at 345.053 kb on + strand, within GFF1030 at 345.053 kb on + strand, within GFF1030 at 345.092 kb on + strand, within GFF1030 at 345.092 kb on + strand, within GFF1030 at 345.092 kb on + strand, within GFF1030 at 345.092 kb on + strand, within GFF1030 at 345.092 kb on + strand, within GFF1030 at 345.092 kb on + strand, within GFF1030 at 345.092 kb on + strand, within GFF1030 at 345.093 kb on - strand, within GFF1030 at 345.093 kb on - strand, within GFF1030 at 345.093 kb on - strand, within GFF1030 at 345.093 kb on - strand, within GFF1030 at 345.093 kb on - strand, within GFF1030 at 345.215 kb on + strand, within GFF1030 at 345.215 kb on + strand, within GFF1030 at 345.215 kb on + strand, within GFF1030 at 345.216 kb on - strand, within GFF1030 at 345.216 kb on - strand, within GFF1030 at 345.216 kb on - strand, within GFF1030 at 345.216 kb on - strand, within GFF1030 at 345.216 kb on - strand, within GFF1030 at 345.386 kb on + strand, within GFF1030 at 345.423 kb on - strand, within GFF1030 at 345.605 kb on + strand at 345.605 kb on + strand at 345.606 kb on - strand at 345.606 kb on - strand at 345.606 kb on - strand at 345.632 kb on + strand at 345.632 kb on + strand at 345.632 kb on + strand at 345.633 kb on - strand at 345.633 kb on - strand at 345.756 kb on - strand at 345.791 kb on + strand, within GFF1031 at 345.791 kb on + strand, within GFF1031 at 345.863 kb on + strand, within GFF1031 at 345.863 kb on + strand, within GFF1031 at 345.863 kb on + strand, within GFF1031 at 345.863 kb on + strand, within GFF1031 at 345.863 kb on + strand, within GFF1031 at 345.864 kb on - strand, within GFF1031 at 345.864 kb on - strand, within GFF1031 at 345.864 kb on - strand, within GFF1031 at 345.864 kb on - strand, within GFF1031 at 345.906 kb on - strand, within GFF1031 at 345.906 kb on - strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.972 kb on - strand, within GFF1031 at 345.972 kb on - strand, within GFF1031 at 345.972 kb on - strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.987 kb on - strand, within GFF1031 at 345.987 kb on - strand, within GFF1031 at 345.987 kb on - strand, within GFF1031 at 345.987 kb on - strand, within GFF1031 at 346.067 kb on + strand, within GFF1031 at 346.067 kb on + strand, within GFF1031 at 346.067 kb on + strand, within GFF1031 at 346.068 kb on - strand, within GFF1031 at 346.100 kb on + strand, within GFF1031 at 346.253 kb on + strand, within GFF1031 at 346.253 kb on + strand, within GFF1031 at 346.254 kb on - strand, within GFF1031 at 346.254 kb on - strand, within GFF1031 at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.421 kb on + strand at 346.421 kb on + strand at 346.421 kb on + strand at 346.421 kb on + strand at 346.421 kb on + strand at 346.421 kb on + strand at 346.422 kb on - strand at 346.422 kb on - strand at 346.422 kb on - strand at 346.422 kb on - strand at 346.422 kb on - strand at 346.503 kb on + strand at 346.503 kb on + strand at 346.503 kb on + strand at 346.504 kb on - strand at 346.504 kb on - strand at 346.504 kb on - strand at 346.504 kb on - strand at 346.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 343,833 + -0.3 343,833 + +0.3 343,833 + -1.2 343,833 + -0.9 343,834 - -0.2 343,834 - -0.0 343,834 - +0.3 343,864 + -0.4 343,864 + -0.3 343,864 + -0.3 343,865 - -0.2 343,865 - +0.0 343,865 - -0.6 343,865 - -0.6 343,865 - +0.2 343,881 + -0.9 343,881 + -0.6 343,881 + +0.6 343,881 + -0.5 343,881 + -0.5 343,881 + -0.4 343,881 + -0.3 343,881 + -1.0 343,882 - -0.6 343,882 - +0.8 343,882 - -0.2 343,882 - -1.2 343,882 - -0.3 343,882 - -0.3 343,882 - -0.1 343,882 - -0.5 343,882 - -0.5 343,882 - +0.6 343,882 - -1.0 344,076 + GFF1029 0.45 -0.2 344,076 + GFF1029 0.45 -0.4 344,076 + GFF1029 0.45 -0.7 344,077 - GFF1029 0.46 -0.6 344,077 - GFF1029 0.46 -1.0 344,077 - GFF1029 0.46 +0.2 344,077 - GFF1029 0.46 -0.1 344,077 - GFF1029 0.46 -2.9 344,077 - GFF1029 0.46 +1.6 344,077 - GFF1029 0.46 -0.7 344,077 - GFF1029 0.46 -0.1 344,077 - GFF1029 0.46 +0.0 344,077 - GFF1029 0.46 +0.9 344,088 + GFF1029 0.48 -1.2 344,088 + GFF1029 0.48 -1.5 344,088 + GFF1029 0.48 +1.4 344,088 + GFF1029 0.48 -0.8 344,088 + GFF1029 0.48 -0.4 344,089 - GFF1029 0.48 -0.6 344,089 - GFF1029 0.48 -0.2 344,089 - GFF1029 0.48 -0.1 344,089 - GFF1029 0.48 -0.7 344,089 - GFF1029 0.48 -0.7 344,089 - GFF1029 0.48 -0.5 344,089 - GFF1029 0.48 -0.8 344,253 + GFF1029 0.85 -1.9 344,253 + GFF1029 0.85 -1.4 344,253 + GFF1029 0.85 -0.5 344,254 - GFF1029 0.85 +0.2 344,254 - GFF1029 0.85 -0.1 344,522 + -1.0 344,522 + -1.3 344,522 + -0.9 344,789 + GFF1030 0.28 +0.5 344,834 + GFF1030 0.32 -0.5 344,834 + GFF1030 0.32 -1.0 344,834 + GFF1030 0.32 -1.8 344,835 - GFF1030 0.32 -0.3 344,835 - GFF1030 0.32 -0.0 344,835 - GFF1030 0.32 -0.6 344,837 + GFF1030 0.33 -0.9 344,837 + GFF1030 0.33 -1.2 344,837 + GFF1030 0.33 -1.7 344,837 + GFF1030 0.33 -1.7 344,837 + GFF1030 0.33 -0.3 344,837 + GFF1030 0.33 -1.2 344,837 + GFF1030 0.33 -1.0 344,838 - GFF1030 0.33 +0.8 344,838 - GFF1030 0.33 +0.2 344,838 - GFF1030 0.33 -0.6 344,954 + GFF1030 0.43 -0.6 344,954 + GFF1030 0.43 -0.8 344,955 - GFF1030 0.43 -1.0 344,955 - GFF1030 0.43 +0.9 344,955 - GFF1030 0.43 -1.0 344,955 - GFF1030 0.43 +1.8 345,053 + GFF1030 0.52 -0.6 345,053 + GFF1030 0.52 -0.6 345,053 + GFF1030 0.52 -1.2 345,092 + GFF1030 0.55 +0.8 345,092 + GFF1030 0.55 -2.9 345,092 + GFF1030 0.55 -1.7 345,092 + GFF1030 0.55 +0.2 345,092 + GFF1030 0.55 +2.3 345,092 + GFF1030 0.55 -0.7 345,092 + GFF1030 0.55 -0.9 345,093 - GFF1030 0.55 +0.2 345,093 - GFF1030 0.55 -0.2 345,093 - GFF1030 0.55 +0.0 345,093 - GFF1030 0.55 -0.7 345,093 - GFF1030 0.55 -0.3 345,215 + GFF1030 0.66 -0.1 345,215 + GFF1030 0.66 -0.2 345,215 + GFF1030 0.66 -0.2 345,216 - GFF1030 0.66 -0.4 345,216 - GFF1030 0.66 +0.8 345,216 - GFF1030 0.66 -0.9 345,216 - GFF1030 0.66 -1.4 345,216 - GFF1030 0.66 +0.8 345,386 + GFF1030 0.81 +0.4 345,423 - GFF1030 0.84 -0.1 345,605 + -1.2 345,605 + -2.0 345,606 - -1.0 345,606 - -0.1 345,606 - -1.4 345,632 + -0.2 345,632 + -0.5 345,632 + -0.7 345,633 - -0.9 345,633 - -1.8 345,756 - -0.8 345,791 + GFF1031 0.14 -0.6 345,791 + GFF1031 0.14 -0.4 345,863 + GFF1031 0.24 -0.5 345,863 + GFF1031 0.24 +0.1 345,863 + GFF1031 0.24 -0.0 345,863 + GFF1031 0.24 -0.0 345,863 + GFF1031 0.24 +0.1 345,864 - GFF1031 0.24 +1.4 345,864 - GFF1031 0.24 +0.0 345,864 - GFF1031 0.24 +0.4 345,864 - GFF1031 0.24 +1.8 345,906 - GFF1031 0.30 -0.6 345,906 - GFF1031 0.30 -3.1 345,971 + GFF1031 0.38 -0.6 345,971 + GFF1031 0.38 +0.2 345,971 + GFF1031 0.38 -0.2 345,971 + GFF1031 0.38 +0.2 345,971 + GFF1031 0.38 +0.1 345,971 + GFF1031 0.38 -0.4 345,972 - GFF1031 0.39 -1.5 345,972 - GFF1031 0.39 -0.0 345,972 - GFF1031 0.39 -0.9 345,986 + GFF1031 0.40 -0.0 345,986 + GFF1031 0.40 +0.3 345,986 + GFF1031 0.40 -0.4 345,986 + GFF1031 0.40 +0.1 345,986 + GFF1031 0.40 -0.2 345,986 + GFF1031 0.40 -0.4 345,986 + GFF1031 0.40 +2.2 345,987 - GFF1031 0.41 +0.5 345,987 - GFF1031 0.41 -1.1 345,987 - GFF1031 0.41 +0.1 345,987 - GFF1031 0.41 +2.8 346,067 + GFF1031 0.51 -0.2 346,067 + GFF1031 0.51 -1.4 346,067 + GFF1031 0.51 +0.6 346,068 - GFF1031 0.51 -0.2 346,100 + GFF1031 0.56 +0.3 346,253 + GFF1031 0.76 +0.7 346,253 + GFF1031 0.76 -0.5 346,254 - GFF1031 0.76 +0.1 346,254 - GFF1031 0.76 -0.6 346,376 + +0.2 346,376 + -0.8 346,376 + +0.3 346,376 + -0.0 346,376 + -0.4 346,376 + -0.4 346,376 + -1.1 346,376 + -0.0 346,377 - +0.8 346,377 - +0.2 346,377 - +0.3 346,377 - +0.3 346,377 - +0.4 346,377 - -1.4 346,377 - -1.0 346,421 + -1.2 346,421 + +0.3 346,421 + +0.8 346,421 + -0.5 346,421 + -0.9 346,421 + +0.3 346,422 - +0.2 346,422 - -0.2 346,422 - -2.0 346,422 - -2.4 346,422 - -0.1 346,503 + -0.7 346,503 + -0.8 346,503 + +0.3 346,504 - -0.1 346,504 - +0.4 346,504 - -0.9 346,504 - -1.0 346,504 - -0.2
Or see this region's nucleotide sequence