Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1010 and GFF1011 are separated by 21 nucleotides GFF1011 and GFF1012 are separated by 53 nucleotides GFF1012 and GFF1013 are separated by 114 nucleotides GFF1013 and GFF1014 are separated by 58 nucleotides
GFF1010 - hypothetical protein, at 328,582 to 330,915
GFF1010
GFF1011 - Regulatory protein MerR, at 330,937 to 331,377
GFF1011
GFF1012 - Cystathionine beta-lyase (EC 4.4.1.8), at 331,431 to 332,651
GFF1012
GFF1013 - hypothetical protein, at 332,766 to 332,969
GFF1013
GFF1014 - Arylesterase precursor (EC 3.1.1.2), at 333,028 to 333,666
GFF1014
Position (kb) 331
332
333 Strain fitness (log2 ratio) -2
-1
0
1
2 at 330.531 kb on - strand, within GFF1010 at 330.587 kb on + strand, within GFF1010 at 330.587 kb on + strand, within GFF1010 at 330.587 kb on + strand, within GFF1010 at 330.587 kb on + strand, within GFF1010 at 330.587 kb on + strand, within GFF1010 at 330.587 kb on + strand, within GFF1010 at 330.587 kb on + strand, within GFF1010 at 330.587 kb on + strand, within GFF1010 at 330.587 kb on + strand, within GFF1010 at 330.588 kb on - strand, within GFF1010 at 330.588 kb on - strand, within GFF1010 at 330.588 kb on - strand, within GFF1010 at 330.588 kb on - strand, within GFF1010 at 330.588 kb on - strand, within GFF1010 at 330.588 kb on - strand, within GFF1010 at 330.588 kb on - strand, within GFF1010 at 330.588 kb on - strand, within GFF1010 at 330.650 kb on + strand, within GFF1010 at 330.650 kb on + strand, within GFF1010 at 330.651 kb on - strand, within GFF1010 at 330.758 kb on + strand at 330.758 kb on + strand at 330.758 kb on + strand at 330.758 kb on + strand at 330.758 kb on + strand at 330.758 kb on + strand at 330.758 kb on + strand at 330.759 kb on - strand at 330.759 kb on - strand at 330.759 kb on - strand at 330.759 kb on - strand at 330.759 kb on - strand at 330.759 kb on - strand at 330.759 kb on - strand at 330.759 kb on - strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.908 kb on + strand at 330.909 kb on - strand at 330.909 kb on - strand at 330.909 kb on - strand at 330.909 kb on - strand at 330.909 kb on - strand at 330.909 kb on - strand at 330.909 kb on - strand at 330.909 kb on - strand at 330.909 kb on - strand at 330.909 kb on - strand at 330.909 kb on - strand at 330.997 kb on + strand, within GFF1011 at 330.997 kb on + strand, within GFF1011 at 330.997 kb on + strand, within GFF1011 at 330.998 kb on - strand, within GFF1011 at 330.998 kb on - strand, within GFF1011 at 331.286 kb on + strand, within GFF1011 at 331.286 kb on + strand, within GFF1011 at 331.286 kb on + strand, within GFF1011 at 331.286 kb on + strand, within GFF1011 at 331.286 kb on + strand, within GFF1011 at 331.286 kb on + strand, within GFF1011 at 331.286 kb on + strand, within GFF1011 at 331.286 kb on + strand, within GFF1011 at 331.286 kb on + strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.287 kb on - strand, within GFF1011 at 331.289 kb on + strand, within GFF1011 at 331.289 kb on + strand, within GFF1011 at 331.289 kb on + strand, within GFF1011 at 331.289 kb on + strand, within GFF1011 at 331.289 kb on + strand, within GFF1011 at 331.290 kb on - strand, within GFF1011 at 331.290 kb on - strand, within GFF1011 at 331.290 kb on - strand, within GFF1011 at 331.290 kb on - strand, within GFF1011 at 331.290 kb on - strand, within GFF1011 at 331.343 kb on + strand at 331.343 kb on + strand at 331.343 kb on + strand at 331.343 kb on + strand at 331.343 kb on + strand at 331.343 kb on + strand at 331.343 kb on + strand at 331.343 kb on + strand at 331.343 kb on + strand at 331.343 kb on + strand at 331.344 kb on - strand at 331.344 kb on - strand at 331.344 kb on - strand at 331.383 kb on + strand at 331.384 kb on - strand at 331.404 kb on - strand at 331.404 kb on - strand at 331.404 kb on - strand at 331.408 kb on - strand at 331.414 kb on + strand at 331.414 kb on + strand at 331.445 kb on + strand at 331.446 kb on - strand at 331.446 kb on - strand at 331.494 kb on + strand at 331.494 kb on + strand at 331.494 kb on + strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.608 kb on + strand, within GFF1012 at 331.609 kb on - strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.614 kb on + strand, within GFF1012 at 331.615 kb on - strand, within GFF1012 at 331.615 kb on - strand, within GFF1012 at 331.615 kb on - strand, within GFF1012 at 331.615 kb on - strand, within GFF1012 at 331.615 kb on - strand, within GFF1012 at 331.615 kb on - strand, within GFF1012 at 331.615 kb on - strand, within GFF1012 at 331.615 kb on - strand, within GFF1012 at 331.615 kb on - strand, within GFF1012 at 331.779 kb on + strand, within GFF1012 at 331.780 kb on - strand, within GFF1012 at 331.842 kb on + strand, within GFF1012 at 331.842 kb on + strand, within GFF1012 at 331.843 kb on - strand, within GFF1012 at 331.843 kb on - strand, within GFF1012 at 331.843 kb on - strand, within GFF1012 at 331.843 kb on - strand, within GFF1012 at 331.932 kb on + strand, within GFF1012 at 332.089 kb on - strand, within GFF1012 at 332.089 kb on - strand, within GFF1012 at 332.089 kb on - strand, within GFF1012 at 332.089 kb on - strand, within GFF1012 at 332.247 kb on + strand, within GFF1012 at 332.247 kb on + strand, within GFF1012 at 332.247 kb on + strand, within GFF1012 at 332.247 kb on + strand, within GFF1012 at 332.248 kb on - strand, within GFF1012 at 332.248 kb on - strand, within GFF1012 at 332.378 kb on + strand, within GFF1012 at 332.379 kb on - strand, within GFF1012 at 332.379 kb on - strand, within GFF1012 at 332.517 kb on + strand, within GFF1012 at 332.517 kb on + strand, within GFF1012 at 332.518 kb on - strand, within GFF1012 at 332.518 kb on - strand, within GFF1012 at 332.650 kb on - strand at 332.650 kb on - strand at 332.650 kb on - strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.721 kb on + strand at 332.721 kb on + strand at 332.721 kb on + strand at 332.721 kb on + strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.781 kb on + strand at 332.781 kb on + strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.787 kb on + strand, within GFF1013 at 332.788 kb on - strand, within GFF1013 at 333.231 kb on - strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.243 kb on - strand, within GFF1014 at 333.243 kb on - strand, within GFF1014 at 333.243 kb on - strand, within GFF1014 at 333.243 kb on - strand, within GFF1014 at 333.243 kb on - strand, within GFF1014 at 333.261 kb on + strand, within GFF1014 at 333.518 kb on - strand, within GFF1014 at 333.545 kb on + strand, within GFF1014 at 333.545 kb on + strand, within GFF1014 at 333.546 kb on - strand, within GFF1014 at 333.546 kb on - strand, within GFF1014 at 333.546 kb on - strand, within GFF1014 at 333.546 kb on - strand, within GFF1014 at 333.546 kb on - strand, within GFF1014
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 330,531 - GFF1010 0.84 -1.2 330,587 + GFF1010 0.86 +1.7 330,587 + GFF1010 0.86 -0.9 330,587 + GFF1010 0.86 -0.5 330,587 + GFF1010 0.86 -0.3 330,587 + GFF1010 0.86 -0.3 330,587 + GFF1010 0.86 -0.3 330,587 + GFF1010 0.86 -0.4 330,587 + GFF1010 0.86 -0.3 330,587 + GFF1010 0.86 -0.3 330,588 - GFF1010 0.86 -0.2 330,588 - GFF1010 0.86 -0.8 330,588 - GFF1010 0.86 +0.2 330,588 - GFF1010 0.86 +0.3 330,588 - GFF1010 0.86 +1.2 330,588 - GFF1010 0.86 -0.8 330,588 - GFF1010 0.86 -0.6 330,588 - GFF1010 0.86 +0.7 330,650 + GFF1010 0.89 -1.4 330,650 + GFF1010 0.89 +0.0 330,651 - GFF1010 0.89 -0.4 330,758 + -1.0 330,758 + -0.5 330,758 + -1.2 330,758 + +0.5 330,758 + -0.1 330,758 + +0.1 330,758 + -1.7 330,759 - +0.2 330,759 - -1.3 330,759 - -0.1 330,759 - +0.7 330,759 - +1.3 330,759 - -1.6 330,759 - -0.6 330,759 - -0.6 330,908 + +2.2 330,908 + -0.3 330,908 + -1.2 330,908 + -1.0 330,908 + -0.6 330,908 + -0.5 330,908 + -1.5 330,908 + +0.1 330,908 + +0.5 330,908 + +0.7 330,908 + -0.1 330,908 + +0.2 330,909 - -1.4 330,909 - -1.1 330,909 - -0.3 330,909 - -1.1 330,909 - +1.2 330,909 - -0.6 330,909 - -0.3 330,909 - -0.8 330,909 - +0.1 330,909 - -1.4 330,909 - -0.2 330,997 + GFF1011 0.14 -0.7 330,997 + GFF1011 0.14 -0.1 330,997 + GFF1011 0.14 -1.6 330,998 - GFF1011 0.14 -1.0 330,998 - GFF1011 0.14 -1.0 331,286 + GFF1011 0.79 -2.6 331,286 + GFF1011 0.79 +0.3 331,286 + GFF1011 0.79 -0.7 331,286 + GFF1011 0.79 -0.3 331,286 + GFF1011 0.79 +0.2 331,286 + GFF1011 0.79 -0.0 331,286 + GFF1011 0.79 +0.2 331,286 + GFF1011 0.79 +0.7 331,286 + GFF1011 0.79 -0.8 331,287 - GFF1011 0.79 +0.2 331,287 - GFF1011 0.79 +1.7 331,287 - GFF1011 0.79 +0.4 331,287 - GFF1011 0.79 -1.4 331,287 - GFF1011 0.79 -0.1 331,287 - GFF1011 0.79 -1.1 331,287 - GFF1011 0.79 +0.0 331,287 - GFF1011 0.79 +0.9 331,287 - GFF1011 0.79 -0.5 331,287 - GFF1011 0.79 +0.2 331,287 - GFF1011 0.79 -0.9 331,287 - GFF1011 0.79 -1.1 331,287 - GFF1011 0.79 -0.8 331,287 - GFF1011 0.79 +0.2 331,287 - GFF1011 0.79 -0.4 331,287 - GFF1011 0.79 -0.6 331,287 - GFF1011 0.79 +0.6 331,287 - GFF1011 0.79 -0.5 331,289 + GFF1011 0.80 -0.5 331,289 + GFF1011 0.80 -0.1 331,289 + GFF1011 0.80 +0.7 331,289 + GFF1011 0.80 +0.7 331,289 + GFF1011 0.80 +0.3 331,290 - GFF1011 0.80 +0.6 331,290 - GFF1011 0.80 -0.5 331,290 - GFF1011 0.80 -0.2 331,290 - GFF1011 0.80 -0.3 331,290 - GFF1011 0.80 -0.4 331,343 + +0.2 331,343 + -0.5 331,343 + +1.2 331,343 + -0.2 331,343 + +0.7 331,343 + -2.1 331,343 + -0.3 331,343 + -0.6 331,343 + -0.2 331,343 + -0.8 331,344 - -0.6 331,344 - -0.3 331,344 - +1.7 331,383 + -0.7 331,384 - -0.6 331,404 - -1.0 331,404 - -0.5 331,404 - -1.7 331,408 - +0.9 331,414 + -0.2 331,414 + -0.1 331,445 + +1.2 331,446 - +0.3 331,446 - -0.8 331,494 + -0.1 331,494 + -0.6 331,494 + -0.3 331,495 - +0.2 331,495 - -0.1 331,495 - -0.5 331,495 - +0.8 331,608 + GFF1012 0.14 -0.3 331,609 - GFF1012 0.15 -0.4 331,614 + GFF1012 0.15 -0.3 331,614 + GFF1012 0.15 -0.3 331,614 + GFF1012 0.15 +0.7 331,614 + GFF1012 0.15 -0.3 331,614 + GFF1012 0.15 -0.1 331,614 + GFF1012 0.15 -1.0 331,614 + GFF1012 0.15 +0.1 331,614 + GFF1012 0.15 -1.8 331,614 + GFF1012 0.15 -0.4 331,614 + GFF1012 0.15 +1.3 331,614 + GFF1012 0.15 -0.3 331,615 - GFF1012 0.15 +0.7 331,615 - GFF1012 0.15 -0.4 331,615 - GFF1012 0.15 -0.6 331,615 - GFF1012 0.15 +0.7 331,615 - GFF1012 0.15 -0.4 331,615 - GFF1012 0.15 -2.1 331,615 - GFF1012 0.15 -0.1 331,615 - GFF1012 0.15 +0.7 331,615 - GFF1012 0.15 +0.7 331,779 + GFF1012 0.29 +0.0 331,780 - GFF1012 0.29 +0.2 331,842 + GFF1012 0.34 -1.6 331,842 + GFF1012 0.34 -0.4 331,843 - GFF1012 0.34 +0.0 331,843 - GFF1012 0.34 -0.7 331,843 - GFF1012 0.34 -1.5 331,843 - GFF1012 0.34 +0.7 331,932 + GFF1012 0.41 +0.5 332,089 - GFF1012 0.54 +0.5 332,089 - GFF1012 0.54 -0.4 332,089 - GFF1012 0.54 -0.0 332,089 - GFF1012 0.54 -0.4 332,247 + GFF1012 0.67 -0.3 332,247 + GFF1012 0.67 -0.4 332,247 + GFF1012 0.67 -1.4 332,247 + GFF1012 0.67 -2.0 332,248 - GFF1012 0.67 -0.2 332,248 - GFF1012 0.67 -0.3 332,378 + GFF1012 0.78 -0.3 332,379 - GFF1012 0.78 +0.7 332,379 - GFF1012 0.78 -1.2 332,517 + GFF1012 0.89 -0.5 332,517 + GFF1012 0.89 -1.0 332,518 - GFF1012 0.89 +0.1 332,518 - GFF1012 0.89 -1.1 332,650 - -0.9 332,650 - -1.1 332,650 - -0.9 332,716 + +0.1 332,716 + -0.6 332,716 + -0.3 332,716 + +0.4 332,716 + +0.2 332,716 + -1.4 332,716 + -0.3 332,717 - +1.1 332,717 - +0.0 332,717 - +1.0 332,717 - -0.0 332,717 - -1.1 332,717 - +1.4 332,717 - -0.8 332,721 + -0.6 332,721 + -0.4 332,721 + -0.7 332,721 + -0.0 332,722 - +0.1 332,722 - -0.5 332,722 - +0.7 332,722 - -0.4 332,722 - -0.4 332,722 - +0.2 332,722 - -0.6 332,781 + +0.2 332,781 + +0.5 332,782 - -0.4 332,782 - -0.7 332,782 - +0.9 332,782 - +0.0 332,782 - +0.1 332,782 - -0.5 332,782 - +0.6 332,787 + GFF1013 0.10 +0.1 332,788 - GFF1013 0.11 -1.3 333,231 - GFF1014 0.32 -0.5 333,242 + GFF1014 0.33 -0.7 333,242 + GFF1014 0.33 -1.2 333,242 + GFF1014 0.33 -0.6 333,242 + GFF1014 0.33 +0.4 333,242 + GFF1014 0.33 -0.8 333,242 + GFF1014 0.33 -0.3 333,243 - GFF1014 0.34 -1.2 333,243 - GFF1014 0.34 +0.4 333,243 - GFF1014 0.34 +0.0 333,243 - GFF1014 0.34 -2.2 333,243 - GFF1014 0.34 -0.8 333,261 + GFF1014 0.36 -0.6 333,518 - GFF1014 0.77 -0.8 333,545 + GFF1014 0.81 +0.2 333,545 + GFF1014 0.81 -0.3 333,546 - GFF1014 0.81 -1.3 333,546 - GFF1014 0.81 +0.7 333,546 - GFF1014 0.81 +0.5 333,546 - GFF1014 0.81 +1.0 333,546 - GFF1014 0.81 -0.6
Or see this region's nucleotide sequence