Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1006 and GFF1007 are separated by 21 nucleotides GFF1007 and GFF1008 are separated by 18 nucleotides GFF1008 and GFF1009 are separated by 53 nucleotides
GFF1006 - Adenylosuccinate synthetase (EC 6.3.4.4), at 325,233 to 326,564
GFF1006
GFF1007 - Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22), at 326,586 to 327,110
GFF1007
GFF1008 - Glyoxalase family protein, at 327,129 to 327,581
GFF1008
GFF1009 - Transcriptional regulator, AraC family, at 327,635 to 328,501
GFF1009
Position (kb) 327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 326.550 kb on + strand at 326.551 kb on - strand at 326.551 kb on - strand at 326.613 kb on + strand at 326.613 kb on + strand at 326.613 kb on + strand at 326.613 kb on + strand at 326.613 kb on + strand at 326.613 kb on + strand at 326.613 kb on + strand at 326.613 kb on + strand at 326.613 kb on + strand at 326.613 kb on + strand at 326.614 kb on - strand at 326.614 kb on - strand at 326.614 kb on - strand at 326.614 kb on - strand at 326.614 kb on - strand at 326.614 kb on - strand at 326.614 kb on - strand at 326.614 kb on - strand at 326.614 kb on - strand at 326.622 kb on + strand at 326.623 kb on - strand at 326.623 kb on - strand at 326.623 kb on - strand at 326.623 kb on - strand at 326.631 kb on + strand at 326.631 kb on + strand at 326.631 kb on + strand at 326.631 kb on + strand at 326.632 kb on - strand at 326.632 kb on - strand at 326.784 kb on + strand, within GFF1007 at 326.784 kb on + strand, within GFF1007 at 326.940 kb on + strand, within GFF1007 at 326.940 kb on + strand, within GFF1007 at 326.940 kb on + strand, within GFF1007 at 326.940 kb on + strand, within GFF1007 at 326.940 kb on + strand, within GFF1007 at 326.940 kb on + strand, within GFF1007 at 326.940 kb on + strand, within GFF1007 at 326.940 kb on + strand, within GFF1007 at 326.941 kb on - strand, within GFF1007 at 326.941 kb on - strand, within GFF1007 at 326.941 kb on - strand, within GFF1007 at 326.941 kb on - strand, within GFF1007 at 326.941 kb on - strand, within GFF1007 at 326.941 kb on - strand, within GFF1007 at 326.941 kb on - strand, within GFF1007 at 326.941 kb on - strand, within GFF1007 at 326.941 kb on - strand, within GFF1007 at 327.009 kb on + strand, within GFF1007 at 327.009 kb on + strand, within GFF1007 at 327.009 kb on + strand, within GFF1007 at 327.010 kb on - strand, within GFF1007 at 327.010 kb on - strand, within GFF1007 at 327.010 kb on - strand, within GFF1007 at 327.010 kb on - strand, within GFF1007 at 327.010 kb on - strand, within GFF1007 at 327.010 kb on - strand, within GFF1007 at 327.063 kb on + strand at 327.063 kb on + strand at 327.063 kb on + strand at 327.063 kb on + strand at 327.063 kb on + strand at 327.064 kb on - strand at 327.064 kb on - strand at 327.064 kb on - strand at 327.064 kb on - strand at 327.064 kb on - strand at 327.064 kb on - strand at 327.161 kb on - strand at 327.161 kb on - strand at 327.161 kb on - strand at 327.259 kb on + strand, within GFF1008 at 327.259 kb on + strand, within GFF1008 at 327.259 kb on + strand, within GFF1008 at 327.259 kb on + strand, within GFF1008 at 327.259 kb on + strand, within GFF1008 at 327.259 kb on + strand, within GFF1008 at 327.259 kb on + strand, within GFF1008 at 327.260 kb on - strand, within GFF1008 at 327.260 kb on - strand, within GFF1008 at 327.260 kb on - strand, within GFF1008 at 327.260 kb on - strand, within GFF1008 at 327.389 kb on + strand, within GFF1008 at 327.390 kb on - strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.517 kb on + strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.518 kb on - strand, within GFF1008 at 327.556 kb on + strand at 327.556 kb on + strand at 327.556 kb on + strand at 327.556 kb on + strand at 327.556 kb on + strand at 327.556 kb on + strand at 327.556 kb on + strand at 327.556 kb on + strand at 327.556 kb on + strand at 327.556 kb on + strand at 327.556 kb on + strand at 327.556 kb on + strand at 327.557 kb on - strand at 327.557 kb on - strand at 327.557 kb on - strand at 327.557 kb on - strand at 327.557 kb on - strand at 327.557 kb on - strand at 327.557 kb on - strand at 327.557 kb on - strand at 327.557 kb on - strand at 327.557 kb on - strand at 327.557 kb on - strand at 327.636 kb on + strand at 327.636 kb on + strand at 327.636 kb on + strand at 327.636 kb on + strand at 327.637 kb on - strand at 327.637 kb on - strand at 327.637 kb on - strand at 327.637 kb on - strand at 327.774 kb on + strand, within GFF1009 at 327.774 kb on + strand, within GFF1009 at 327.774 kb on + strand, within GFF1009 at 327.774 kb on + strand, within GFF1009 at 327.775 kb on - strand, within GFF1009 at 327.809 kb on + strand, within GFF1009 at 327.809 kb on + strand, within GFF1009 at 327.809 kb on + strand, within GFF1009 at 327.809 kb on + strand, within GFF1009 at 327.809 kb on + strand, within GFF1009 at 327.809 kb on + strand, within GFF1009 at 327.810 kb on - strand, within GFF1009 at 327.810 kb on - strand, within GFF1009 at 327.810 kb on - strand, within GFF1009 at 327.810 kb on - strand, within GFF1009 at 327.861 kb on + strand, within GFF1009 at 327.861 kb on + strand, within GFF1009 at 327.861 kb on + strand, within GFF1009 at 327.861 kb on + strand, within GFF1009 at 327.861 kb on + strand, within GFF1009 at 327.862 kb on - strand, within GFF1009 at 327.862 kb on - strand, within GFF1009 at 327.862 kb on - strand, within GFF1009 at 327.862 kb on - strand, within GFF1009 at 327.862 kb on - strand, within GFF1009 at 327.862 kb on - strand, within GFF1009 at 327.921 kb on + strand, within GFF1009 at 327.921 kb on + strand, within GFF1009 at 327.922 kb on - strand, within GFF1009 at 328.086 kb on + strand, within GFF1009 at 328.087 kb on - strand, within GFF1009 at 328.153 kb on + strand, within GFF1009 at 328.154 kb on - strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.260 kb on + strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009 at 328.261 kb on - strand, within GFF1009
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 326,550 + +0.7 326,551 - -1.2 326,551 - -0.6 326,613 + -0.0 326,613 + -1.6 326,613 + -0.6 326,613 + -1.7 326,613 + -1.1 326,613 + -0.4 326,613 + -0.7 326,613 + +0.7 326,613 + -2.0 326,613 + +0.1 326,614 - +1.1 326,614 - -1.1 326,614 - -0.3 326,614 - -2.0 326,614 - -0.4 326,614 - -1.2 326,614 - +0.7 326,614 - -1.1 326,614 - -0.6 326,622 + -0.7 326,623 - -0.2 326,623 - -0.9 326,623 - -1.0 326,623 - -0.3 326,631 + -0.7 326,631 + +0.5 326,631 + -0.4 326,631 + -0.5 326,632 - -0.7 326,632 - +0.1 326,784 + GFF1007 0.38 -1.3 326,784 + GFF1007 0.38 +1.0 326,940 + GFF1007 0.67 -1.1 326,940 + GFF1007 0.67 -1.0 326,940 + GFF1007 0.67 -2.0 326,940 + GFF1007 0.67 +0.1 326,940 + GFF1007 0.67 -2.1 326,940 + GFF1007 0.67 -0.1 326,940 + GFF1007 0.67 -1.2 326,940 + GFF1007 0.67 -3.0 326,941 - GFF1007 0.68 -1.4 326,941 - GFF1007 0.68 +0.1 326,941 - GFF1007 0.68 -1.4 326,941 - GFF1007 0.68 -0.6 326,941 - GFF1007 0.68 +1.7 326,941 - GFF1007 0.68 +0.2 326,941 - GFF1007 0.68 -0.9 326,941 - GFF1007 0.68 +0.7 326,941 - GFF1007 0.68 -1.0 327,009 + GFF1007 0.81 +0.1 327,009 + GFF1007 0.81 +0.7 327,009 + GFF1007 0.81 +0.4 327,010 - GFF1007 0.81 -1.5 327,010 - GFF1007 0.81 -1.1 327,010 - GFF1007 0.81 -0.3 327,010 - GFF1007 0.81 -0.9 327,010 - GFF1007 0.81 -0.5 327,010 - GFF1007 0.81 -1.3 327,063 + -0.3 327,063 + -0.6 327,063 + +0.1 327,063 + -0.7 327,063 + -0.9 327,064 - -0.1 327,064 - -1.1 327,064 - -0.9 327,064 - -0.8 327,064 - -0.6 327,064 - -0.5 327,161 - -0.1 327,161 - -1.5 327,161 - +0.5 327,259 + GFF1008 0.29 -0.6 327,259 + GFF1008 0.29 +0.3 327,259 + GFF1008 0.29 -0.5 327,259 + GFF1008 0.29 +2.7 327,259 + GFF1008 0.29 -1.3 327,259 + GFF1008 0.29 -0.2 327,259 + GFF1008 0.29 -0.4 327,260 - GFF1008 0.29 -1.0 327,260 - GFF1008 0.29 -0.9 327,260 - GFF1008 0.29 -0.4 327,260 - GFF1008 0.29 -0.2 327,389 + GFF1008 0.57 -0.4 327,390 - GFF1008 0.58 -1.1 327,517 + GFF1008 0.86 -0.3 327,517 + GFF1008 0.86 -0.4 327,517 + GFF1008 0.86 -0.3 327,517 + GFF1008 0.86 +0.4 327,517 + GFF1008 0.86 -0.5 327,517 + GFF1008 0.86 +0.7 327,517 + GFF1008 0.86 -0.7 327,517 + GFF1008 0.86 +0.4 327,517 + GFF1008 0.86 -0.1 327,517 + GFF1008 0.86 +1.5 327,517 + GFF1008 0.86 -1.0 327,518 - GFF1008 0.86 -1.7 327,518 - GFF1008 0.86 -0.9 327,518 - GFF1008 0.86 -0.3 327,518 - GFF1008 0.86 -1.2 327,518 - GFF1008 0.86 +0.5 327,518 - GFF1008 0.86 -0.5 327,518 - GFF1008 0.86 -0.3 327,518 - GFF1008 0.86 +0.9 327,518 - GFF1008 0.86 -0.6 327,518 - GFF1008 0.86 -1.0 327,518 - GFF1008 0.86 +0.1 327,556 + -0.1 327,556 + +0.4 327,556 + -0.5 327,556 + +0.2 327,556 + +0.2 327,556 + -0.4 327,556 + +0.2 327,556 + -0.7 327,556 + -0.9 327,556 + -0.8 327,556 + -1.6 327,556 + +1.1 327,557 - +0.0 327,557 - -1.2 327,557 - -0.1 327,557 - -0.5 327,557 - -0.1 327,557 - -1.4 327,557 - +0.3 327,557 - +0.9 327,557 - -0.6 327,557 - -0.6 327,557 - -0.9 327,636 + -0.9 327,636 + -1.1 327,636 + -0.5 327,636 + -1.2 327,637 - -0.6 327,637 - -0.3 327,637 - -0.5 327,637 - -1.9 327,774 + GFF1009 0.16 +2.9 327,774 + GFF1009 0.16 -0.2 327,774 + GFF1009 0.16 +1.2 327,774 + GFF1009 0.16 +0.2 327,775 - GFF1009 0.16 +0.3 327,809 + GFF1009 0.20 -0.5 327,809 + GFF1009 0.20 -0.7 327,809 + GFF1009 0.20 -0.9 327,809 + GFF1009 0.20 -0.3 327,809 + GFF1009 0.20 +0.7 327,809 + GFF1009 0.20 -3.1 327,810 - GFF1009 0.20 -0.3 327,810 - GFF1009 0.20 -1.3 327,810 - GFF1009 0.20 -0.8 327,810 - GFF1009 0.20 -0.9 327,861 + GFF1009 0.26 -0.7 327,861 + GFF1009 0.26 -0.5 327,861 + GFF1009 0.26 +1.5 327,861 + GFF1009 0.26 -0.4 327,861 + GFF1009 0.26 -0.3 327,862 - GFF1009 0.26 -0.1 327,862 - GFF1009 0.26 -0.5 327,862 - GFF1009 0.26 -0.6 327,862 - GFF1009 0.26 -1.4 327,862 - GFF1009 0.26 -1.4 327,862 - GFF1009 0.26 -0.8 327,921 + GFF1009 0.33 -0.7 327,921 + GFF1009 0.33 -0.4 327,922 - GFF1009 0.33 +0.2 328,086 + GFF1009 0.52 +0.7 328,087 - GFF1009 0.52 +1.2 328,153 + GFF1009 0.60 -0.0 328,154 - GFF1009 0.60 -1.8 328,260 + GFF1009 0.72 +0.5 328,260 + GFF1009 0.72 -0.3 328,260 + GFF1009 0.72 -1.0 328,260 + GFF1009 0.72 -0.3 328,260 + GFF1009 0.72 -0.9 328,260 + GFF1009 0.72 -0.3 328,260 + GFF1009 0.72 -1.6 328,260 + GFF1009 0.72 -0.4 328,260 + GFF1009 0.72 +0.2 328,260 + GFF1009 0.72 -0.9 328,260 + GFF1009 0.72 +0.4 328,260 + GFF1009 0.72 -0.4 328,260 + GFF1009 0.72 -0.1 328,260 + GFF1009 0.72 -1.0 328,261 - GFF1009 0.72 -1.3 328,261 - GFF1009 0.72 -0.3 328,261 - GFF1009 0.72 -0.3 328,261 - GFF1009 0.72 -0.2 328,261 - GFF1009 0.72 -0.3 328,261 - GFF1009 0.72 -0.8 328,261 - GFF1009 0.72 +0.9 328,261 - GFF1009 0.72 -0.4 328,261 - GFF1009 0.72 -0.8 328,261 - GFF1009 0.72 +0.2 328,261 - GFF1009 0.72 +1.1 328,261 - GFF1009 0.72 -0.5
Or see this region's nucleotide sequence