Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF98 and GFF99 overlap by 1 nucleotides GFF99 and GFF100 overlap by 4 nucleotides
GFF98 - Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system, at 123,851 to 124,849
GFF98
GFF99 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 124,849 to 125,409
GFF99
GFF100 - no description, at 125,406 to 126,104
GFF100
Position (kb) 124
125
126 Strain fitness (log2 ratio) -2
-1
0
1
2 at 124.853 kb on + strand at 124.854 kb on - strand at 124.854 kb on - strand at 125.194 kb on + strand, within GFF99 at 125.194 kb on + strand, within GFF99 at 125.194 kb on + strand, within GFF99 at 125.360 kb on + strand at 125.360 kb on + strand at 125.547 kb on + strand, within GFF100 at 125.548 kb on - strand, within GFF100 at 125.548 kb on - strand, within GFF100 at 125.548 kb on - strand, within GFF100 at 125.548 kb on - strand, within GFF100 at 125.651 kb on - strand, within GFF100 at 125.958 kb on + strand, within GFF100 at 125.958 kb on + strand, within GFF100 at 125.958 kb on + strand, within GFF100 at 125.958 kb on + strand, within GFF100 at 125.958 kb on + strand, within GFF100 at 125.959 kb on - strand, within GFF100 at 125.959 kb on - strand, within GFF100 at 125.984 kb on - strand, within GFF100 at 126.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 124,853 + +0.4 124,854 - +0.5 124,854 - -0.8 125,194 + GFF99 0.61 -2.0 125,194 + GFF99 0.61 -0.3 125,194 + GFF99 0.61 -0.4 125,360 + +1.8 125,360 + +0.4 125,547 + GFF100 0.20 -0.0 125,548 - GFF100 0.20 -0.0 125,548 - GFF100 0.20 -0.7 125,548 - GFF100 0.20 +0.2 125,548 - GFF100 0.20 -0.0 125,651 - GFF100 0.35 -0.0 125,958 + GFF100 0.79 +0.2 125,958 + GFF100 0.79 +0.2 125,958 + GFF100 0.79 +0.5 125,958 + GFF100 0.79 +0.6 125,958 + GFF100 0.79 -0.3 125,959 - GFF100 0.79 +0.1 125,959 - GFF100 0.79 +1.1 125,984 - GFF100 0.83 +0.6 126,248 - -0.3
Or see this region's nucleotide sequence