Strain Fitness in Variovorax sp. SCN45 around GFF940

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF938 and GFF939 overlap by 11 nucleotidesGFF939 and GFF940 are separated by 118 nucleotidesGFF940 and GFF941 are separated by 112 nucleotidesGFF941 and GFF942 overlap by 4 nucleotides GFF938 - Methylmalonyl-CoA epimerase (EC 5.1.99.1), at 252,387 to 252,878 GFF938 GFF939 - Transcriptional regulator, AsnC family, at 252,868 to 253,365 GFF939 GFF940 - Permease of the drug/metabolite transporter (DMT) superfamily, at 253,484 to 254,392 GFF940 GFF941 - Transporter, LysE family, at 254,505 to 255,143 GFF941 GFF942 - Iron-sulfur cluster-binding protein, at 255,140 to 255,775 GFF942 Position (kb) 253 254 255Strain fitness (log2 ratio) -2 -1 0 1 2at 252.869 kb on + strandat 252.869 kb on + strandat 252.870 kb on - strandat 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.070 kb on + strand, within GFF939at 253.071 kb on - strand, within GFF939at 253.161 kb on - strand, within GFF939at 253.161 kb on - strand, within GFF939at 253.161 kb on - strand, within GFF939at 253.376 kb on + strandat 253.440 kb on + strandat 253.441 kb on - strandat 253.441 kb on - strandat 253.592 kb on + strand, within GFF940at 253.592 kb on + strand, within GFF940at 253.592 kb on + strand, within GFF940at 253.592 kb on + strand, within GFF940at 253.593 kb on - strand, within GFF940at 253.593 kb on - strand, within GFF940at 253.593 kb on - strand, within GFF940at 253.593 kb on - strand, within GFF940at 253.593 kb on - strand, within GFF940at 253.593 kb on - strand, within GFF940at 253.607 kb on + strand, within GFF940at 253.607 kb on + strand, within GFF940at 253.607 kb on + strand, within GFF940at 253.607 kb on + strand, within GFF940at 253.608 kb on - strand, within GFF940at 253.608 kb on - strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.172 kb on - strand, within GFF940at 254.172 kb on - strand, within GFF940at 254.172 kb on - strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.255 kb on + strand, within GFF940at 254.255 kb on + strand, within GFF940at 254.255 kb on + strand, within GFF940at 254.255 kb on + strand, within GFF940at 254.255 kb on + strand, within GFF940at 254.256 kb on - strand, within GFF940at 254.256 kb on - strand, within GFF940at 254.256 kb on - strand, within GFF940at 254.256 kb on - strand, within GFF940at 254.256 kb on - strand, within GFF940at 254.261 kb on + strand, within GFF940at 254.334 kb on - strandat 254.377 kb on - strandat 254.506 kb on + strandat 254.528 kb on + strandat 254.529 kb on - strandat 254.529 kb on - strandat 254.635 kb on + strand, within GFF941at 254.635 kb on + strand, within GFF941at 254.635 kb on + strand, within GFF941at 254.635 kb on + strand, within GFF941at 254.636 kb on - strand, within GFF941at 254.636 kb on - strand, within GFF941at 254.689 kb on + strand, within GFF941at 254.689 kb on + strand, within GFF941at 254.689 kb on + strand, within GFF941at 254.690 kb on - strand, within GFF941at 254.690 kb on - strand, within GFF941at 254.690 kb on - strand, within GFF941at 254.690 kb on - strand, within GFF941at 254.874 kb on + strand, within GFF941at 254.874 kb on + strand, within GFF941at 254.874 kb on + strand, within GFF941at 254.874 kb on + strand, within GFF941at 254.874 kb on + strand, within GFF941at 254.875 kb on - strand, within GFF941at 254.875 kb on - strand, within GFF941at 254.875 kb on - strand, within GFF941at 254.875 kb on - strand, within GFF941at 254.875 kb on - strand, within GFF941at 254.899 kb on + strand, within GFF941at 254.899 kb on + strand, within GFF941at 254.899 kb on + strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.919 kb on + strand, within GFF941at 254.920 kb on - strand, within GFF941at 254.920 kb on - strand, within GFF941at 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.309 kb on + strand, within GFF942at 255.310 kb on - strand, within GFF942at 255.310 kb on - strand, within GFF942

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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252,869 + -1.3
252,869 + -0.2
252,870 - -0.4
253,070 + GFF939 0.41 -1.7
253,070 + GFF939 0.41 -0.7
253,070 + GFF939 0.41 -0.2
253,070 + GFF939 0.41 +1.8
253,070 + GFF939 0.41 -0.3
253,070 + GFF939 0.41 +0.2
253,070 + GFF939 0.41 +0.8
253,070 + GFF939 0.41 -0.4
253,070 + GFF939 0.41 +0.5
253,070 + GFF939 0.41 -0.3
253,070 + GFF939 0.41 -0.2
253,071 - GFF939 0.41 -0.8
253,161 - GFF939 0.59 +1.5
253,161 - GFF939 0.59 -0.2
253,161 - GFF939 0.59 -0.2
253,376 + -0.3
253,440 + -0.9
253,441 - +1.8
253,441 - -0.8
253,592 + GFF940 0.12 -0.3
253,592 + GFF940 0.12 -0.2
253,592 + GFF940 0.12 -0.3
253,592 + GFF940 0.12 +0.3
253,593 - GFF940 0.12 +0.1
253,593 - GFF940 0.12 +1.5
253,593 - GFF940 0.12 +0.5
253,593 - GFF940 0.12 -0.8
253,593 - GFF940 0.12 -1.3
253,593 - GFF940 0.12 -1.3
253,607 + GFF940 0.14 +0.3
253,607 + GFF940 0.14 +1.6
253,607 + GFF940 0.14 -0.1
253,607 + GFF940 0.14 +0.5
253,608 - GFF940 0.14 -0.5
253,608 - GFF940 0.14 -1.0
254,171 + GFF940 0.76 -0.6
254,171 + GFF940 0.76 -0.2
254,171 + GFF940 0.76 -0.1
254,171 + GFF940 0.76 -1.2
254,171 + GFF940 0.76 +0.3
254,171 + GFF940 0.76 -1.0
254,172 - GFF940 0.76 -0.6
254,172 - GFF940 0.76 -0.5
254,172 - GFF940 0.76 -1.0
254,210 + GFF940 0.80 -0.2
254,210 + GFF940 0.80 +0.2
254,210 + GFF940 0.80 +0.4
254,210 + GFF940 0.80 -1.4
254,210 + GFF940 0.80 +0.4
254,210 + GFF940 0.80 -0.3
254,210 + GFF940 0.80 -1.0
254,210 + GFF940 0.80 -1.1
254,210 + GFF940 0.80 -0.3
254,210 + GFF940 0.80 +0.2
254,211 - GFF940 0.80 -0.8
254,211 - GFF940 0.80 +1.5
254,211 - GFF940 0.80 -0.7
254,211 - GFF940 0.80 +0.3
254,211 - GFF940 0.80 -0.5
254,211 - GFF940 0.80 +0.1
254,211 - GFF940 0.80 -2.1
254,211 - GFF940 0.80 -0.8
254,211 - GFF940 0.80 +1.2
254,211 - GFF940 0.80 -0.7
254,211 - GFF940 0.80 -0.5
254,211 - GFF940 0.80 +0.3
254,255 + GFF940 0.85 -0.3
254,255 + GFF940 0.85 -0.8
254,255 + GFF940 0.85 -0.0
254,255 + GFF940 0.85 -0.1
254,255 + GFF940 0.85 -0.4
254,256 - GFF940 0.85 -0.2
254,256 - GFF940 0.85 -0.1
254,256 - GFF940 0.85 -0.3
254,256 - GFF940 0.85 -0.5
254,256 - GFF940 0.85 -0.8
254,261 + GFF940 0.85 -0.3
254,334 - +0.2
254,377 - -0.5
254,506 + -0.1
254,528 + -0.7
254,529 - -0.7
254,529 - +0.4
254,635 + GFF941 0.20 +1.2
254,635 + GFF941 0.20 +0.2
254,635 + GFF941 0.20 +1.1
254,635 + GFF941 0.20 -1.1
254,636 - GFF941 0.21 -0.3
254,636 - GFF941 0.21 -0.1
254,689 + GFF941 0.29 -1.4
254,689 + GFF941 0.29 +0.6
254,689 + GFF941 0.29 -0.1
254,690 - GFF941 0.29 -0.0
254,690 - GFF941 0.29 -0.7
254,690 - GFF941 0.29 +0.5
254,690 - GFF941 0.29 -1.5
254,874 + GFF941 0.58 -0.4
254,874 + GFF941 0.58 -0.4
254,874 + GFF941 0.58 +0.4
254,874 + GFF941 0.58 +1.1
254,874 + GFF941 0.58 -0.0
254,875 - GFF941 0.58 +0.0
254,875 - GFF941 0.58 -0.2
254,875 - GFF941 0.58 -0.3
254,875 - GFF941 0.58 -0.8
254,875 - GFF941 0.58 -0.7
254,899 + GFF941 0.62 +0.2
254,899 + GFF941 0.62 +0.2
254,899 + GFF941 0.62 -0.9
254,900 - GFF941 0.62 -0.4
254,900 - GFF941 0.62 -0.2
254,900 - GFF941 0.62 -0.2
254,900 - GFF941 0.62 -0.2
254,900 - GFF941 0.62 +0.3
254,900 - GFF941 0.62 +0.8
254,900 - GFF941 0.62 -0.8
254,919 + GFF941 0.65 -1.1
254,920 - GFF941 0.65 +0.7
254,920 - GFF941 0.65 -0.2
255,118 + -1.2
255,118 + +0.8
255,118 + +0.6
255,118 + -0.4
255,118 + -0.3
255,118 + -0.3
255,118 + +0.1
255,118 + +0.6
255,118 + -0.0
255,118 + +0.1
255,118 + +0.1
255,118 + -0.8
255,118 + +0.2
255,118 + -0.4
255,118 + +0.1
255,118 + +0.2
255,118 + +1.6
255,118 + -0.3
255,118 + -0.4
255,118 + -0.2
255,118 + +1.1
255,118 + -0.9
255,118 + +0.1
255,118 + -0.0
255,118 + +0.3
255,119 - -0.7
255,119 - +0.3
255,119 - -0.1
255,119 - -0.5
255,119 - -0.2
255,119 - +0.1
255,119 - -0.2
255,119 - -0.5
255,119 - -1.3
255,119 - -0.9
255,119 - -1.1
255,119 - -0.2
255,119 - -0.5
255,119 - -0.4
255,119 - -0.0
255,119 - -0.6
255,119 - -1.3
255,119 - -0.5
255,119 - -0.3
255,119 - -0.3
255,119 - +0.5
255,119 - +0.4
255,119 - +0.2
255,119 - +1.2
255,309 + GFF942 0.27 +0.2
255,310 - GFF942 0.27 +0.2
255,310 - GFF942 0.27 +0.0

Or see this region's nucleotide sequence