Strain Fitness in Variovorax sp. SCN45 around GFF935

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF934 and GFF935 are separated by 401 nucleotidesGFF935 and GFF936 are separated by 63 nucleotides GFF934 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3), at 247,107 to 248,651 GFF934 GFF935 - no description, at 249,053 to 249,244 GFF935 GFF936 - Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3), at 249,308 to 251,356 GFF936 Position (kb) 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 248.173 kb on - strand, within GFF934at 248.232 kb on + strand, within GFF934at 248.232 kb on + strand, within GFF934at 248.232 kb on + strand, within GFF934at 248.233 kb on - strand, within GFF934at 248.274 kb on + strand, within GFF934at 248.274 kb on + strand, within GFF934at 248.274 kb on + strand, within GFF934at 248.275 kb on - strand, within GFF934at 248.275 kb on - strand, within GFF934at 248.334 kb on + strand, within GFF934at 248.487 kb on + strand, within GFF934at 248.487 kb on + strand, within GFF934at 248.487 kb on + strand, within GFF934at 248.488 kb on - strand, within GFF934at 248.488 kb on - strand, within GFF934at 248.512 kb on - strandat 248.512 kb on - strandat 248.532 kb on + strandat 248.532 kb on + strandat 248.533 kb on - strandat 248.533 kb on - strandat 248.784 kb on + strandat 248.784 kb on + strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.833 kb on + strandat 248.885 kb on + strandat 248.885 kb on + strandat 248.885 kb on + strandat 248.885 kb on + strandat 248.886 kb on - strandat 248.886 kb on - strandat 248.886 kb on - strandat 248.886 kb on - strandat 249.001 kb on + strandat 249.002 kb on - strandat 249.002 kb on - strandat 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.133 kb on + strand, within GFF935at 249.133 kb on + strand, within GFF935at 249.134 kb on - strand, within GFF935at 249.134 kb on - strand, within GFF935at 249.155 kb on + strand, within GFF935at 249.156 kb on - strand, within GFF935at 249.156 kb on - strand, within GFF935at 249.161 kb on + strand, within GFF935at 249.161 kb on + strand, within GFF935at 249.177 kb on - strand, within GFF935at 249.242 kb on + strandat 249.243 kb on - strandat 249.243 kb on - strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.272 kb on - strandat 249.272 kb on - strandat 249.272 kb on - strandat 249.301 kb on - strandat 249.485 kb on + strandat 249.485 kb on + strandat 249.485 kb on + strandat 249.485 kb on + strandat 249.486 kb on - strandat 249.486 kb on - strandat 249.486 kb on - strandat 249.629 kb on + strand, within GFF936at 249.850 kb on + strand, within GFF936at 249.850 kb on + strand, within GFF936at 249.851 kb on - strand, within GFF936at 249.851 kb on - strand, within GFF936at 249.851 kb on - strand, within GFF936at 249.974 kb on + strand, within GFF936at 249.974 kb on + strand, within GFF936at 249.974 kb on + strand, within GFF936at 249.975 kb on - strand, within GFF936at 250.109 kb on + strand, within GFF936at 250.110 kb on - strand, within GFF936

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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248,173 - GFF934 0.69 -1.2
248,232 + GFF934 0.73 -0.8
248,232 + GFF934 0.73 -1.2
248,232 + GFF934 0.73 +0.4
248,233 - GFF934 0.73 -0.7
248,274 + GFF934 0.76 +1.1
248,274 + GFF934 0.76 -1.6
248,274 + GFF934 0.76 +0.6
248,275 - GFF934 0.76 +0.2
248,275 - GFF934 0.76 -0.3
248,334 + GFF934 0.79 +1.8
248,487 + GFF934 0.89 -0.2
248,487 + GFF934 0.89 -0.5
248,487 + GFF934 0.89 -0.7
248,488 - GFF934 0.89 +0.5
248,488 - GFF934 0.89 -1.3
248,512 - +0.5
248,512 - -1.7
248,532 + -0.4
248,532 + +0.2
248,533 - -0.6
248,533 - -0.4
248,784 + -0.8
248,784 + -0.8
248,785 - -0.8
248,785 - -0.7
248,785 - -0.4
248,785 - +0.9
248,785 - -0.1
248,833 + -1.3
248,885 + -0.2
248,885 + -2.2
248,885 + +0.3
248,885 + -0.0
248,886 - -0.2
248,886 - -0.4
248,886 - +0.2
248,886 - -0.9
249,001 + -0.6
249,002 - +0.1
249,002 - +0.2
249,101 + GFF935 0.25 -0.2
249,101 + GFF935 0.25 -0.7
249,101 + GFF935 0.25 +0.4
249,101 + GFF935 0.25 +0.2
249,101 + GFF935 0.25 +0.2
249,101 + GFF935 0.25 -0.0
249,102 - GFF935 0.26 -0.5
249,102 - GFF935 0.26 -0.6
249,102 - GFF935 0.26 +1.2
249,102 - GFF935 0.26 -0.2
249,102 - GFF935 0.26 -1.1
249,133 + GFF935 0.42 -0.8
249,133 + GFF935 0.42 -0.6
249,134 - GFF935 0.42 -0.7
249,134 - GFF935 0.42 -0.6
249,155 + GFF935 0.53 +0.7
249,156 - GFF935 0.54 -0.5
249,156 - GFF935 0.54 -0.2
249,161 + GFF935 0.56 -0.8
249,161 + GFF935 0.56 -0.2
249,177 - GFF935 0.65 +0.1
249,242 + -1.3
249,243 - +0.7
249,243 - -0.7
249,271 + -1.1
249,271 + +0.4
249,271 + -0.2
249,271 + -1.0
249,271 + -0.7
249,272 - -0.7
249,272 - -0.1
249,272 - -0.7
249,301 - -0.1
249,485 + -1.6
249,485 + +0.2
249,485 + -0.4
249,485 + -1.0
249,486 - -0.6
249,486 - -0.9
249,486 - -0.3
249,629 + GFF936 0.16 +0.1
249,850 + GFF936 0.26 +0.7
249,850 + GFF936 0.26 -0.1
249,851 - GFF936 0.27 -1.0
249,851 - GFF936 0.27 -0.1
249,851 - GFF936 0.27 -0.4
249,974 + GFF936 0.33 -0.7
249,974 + GFF936 0.33 +0.6
249,974 + GFF936 0.33 +2.1
249,975 - GFF936 0.33 +0.5
250,109 + GFF936 0.39 -0.0
250,110 - GFF936 0.39 +0.3

Or see this region's nucleotide sequence