Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF912 and GFF913 overlap by 4 nucleotides GFF913 and GFF914 overlap by 4 nucleotides GFF914 and GFF915 are separated by 1 nucleotides
GFF912 - putative acetyl esterase, at 223,061 to 224,053
GFF912
GFF913 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 224,050 to 225,714
GFF913
GFF914 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 225,711 to 226,526
GFF914
GFF915 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 226,528 to 227,472
GFF915
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 223.078 kb on + strand at 223.079 kb on - strand at 223.091 kb on + strand at 223.091 kb on + strand at 223.092 kb on - strand at 223.351 kb on - strand, within GFF912 at 223.434 kb on + strand, within GFF912 at 223.435 kb on - strand, within GFF912 at 223.435 kb on - strand, within GFF912 at 223.443 kb on + strand, within GFF912 at 223.444 kb on - strand, within GFF912 at 223.633 kb on + strand, within GFF912 at 223.653 kb on + strand, within GFF912 at 223.653 kb on + strand, within GFF912 at 223.654 kb on - strand, within GFF912 at 223.654 kb on - strand, within GFF912 at 223.755 kb on + strand, within GFF912 at 223.756 kb on - strand, within GFF912 at 223.756 kb on - strand, within GFF912 at 223.791 kb on + strand, within GFF912 at 223.792 kb on - strand, within GFF912 at 223.792 kb on - strand, within GFF912 at 223.920 kb on + strand, within GFF912 at 224.029 kb on - strand at 224.138 kb on + strand at 224.139 kb on - strand at 224.139 kb on - strand at 224.870 kb on - strand, within GFF913 at 224.948 kb on + strand, within GFF913 at 224.948 kb on + strand, within GFF913 at 224.949 kb on - strand, within GFF913 at 224.949 kb on - strand, within GFF913 at 225.116 kb on - strand, within GFF913 at 225.246 kb on - strand, within GFF913 at 225.835 kb on + strand, within GFF914 at 225.835 kb on + strand, within GFF914 at 225.835 kb on + strand, within GFF914 at 225.836 kb on - strand, within GFF914 at 226.003 kb on + strand, within GFF914 at 226.003 kb on + strand, within GFF914 at 226.004 kb on - strand, within GFF914 at 226.042 kb on + strand, within GFF914 at 226.102 kb on + strand, within GFF914 at 226.102 kb on + strand, within GFF914 at 226.103 kb on - strand, within GFF914 at 226.435 kb on + strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.505 kb on + strand at 226.529 kb on + strand at 226.529 kb on + strand at 226.562 kb on + strand at 226.563 kb on - strand at 226.595 kb on + strand at 226.596 kb on - strand at 226.596 kb on - strand at 226.596 kb on - strand at 226.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 223,078 + +0.8 223,079 - -0.1 223,091 + -1.0 223,091 + +1.4 223,092 - -0.1 223,351 - GFF912 0.29 +1.4 223,434 + GFF912 0.38 -0.1 223,435 - GFF912 0.38 +0.5 223,435 - GFF912 0.38 +1.1 223,443 + GFF912 0.38 -0.3 223,444 - GFF912 0.39 +0.3 223,633 + GFF912 0.58 +1.3 223,653 + GFF912 0.60 +0.8 223,653 + GFF912 0.60 -1.3 223,654 - GFF912 0.60 +4.0 223,654 - GFF912 0.60 +0.2 223,755 + GFF912 0.70 +0.4 223,756 - GFF912 0.70 +0.6 223,756 - GFF912 0.70 -0.2 223,791 + GFF912 0.74 -1.4 223,792 - GFF912 0.74 -0.1 223,792 - GFF912 0.74 -0.7 223,920 + GFF912 0.87 +0.2 224,029 - +0.2 224,138 + -0.7 224,139 - -1.1 224,139 - +0.4 224,870 - GFF913 0.49 -0.5 224,948 + GFF913 0.54 -0.4 224,948 + GFF913 0.54 -0.8 224,949 - GFF913 0.54 -0.5 224,949 - GFF913 0.54 +1.4 225,116 - GFF913 0.64 -1.0 225,246 - GFF913 0.72 +0.8 225,835 + GFF914 0.15 +1.1 225,835 + GFF914 0.15 -0.3 225,835 + GFF914 0.15 -0.1 225,836 - GFF914 0.15 -0.2 226,003 + GFF914 0.36 +0.3 226,003 + GFF914 0.36 +0.2 226,004 - GFF914 0.36 +0.1 226,042 + GFF914 0.41 +0.7 226,102 + GFF914 0.48 +0.8 226,102 + GFF914 0.48 -1.2 226,103 - GFF914 0.48 -0.7 226,435 + GFF914 0.89 +1.2 226,436 - GFF914 0.89 -1.2 226,436 - GFF914 0.89 -0.3 226,436 - GFF914 0.89 +0.0 226,436 - GFF914 0.89 -1.2 226,436 - GFF914 0.89 -1.0 226,436 - GFF914 0.89 -0.5 226,436 - GFF914 0.89 +0.0 226,436 - GFF914 0.89 -0.5 226,505 + +1.1 226,529 + -0.0 226,529 + -0.7 226,562 + -2.4 226,563 - +2.4 226,595 + +0.3 226,596 - +0.5 226,596 - -0.5 226,596 - +0.3 226,596 - -1.0
Or see this region's nucleotide sequence