Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF88 and GFF89 are separated by 5 nucleotides GFF89 and GFF90 are separated by 61 nucleotides GFF90 and GFF91 are separated by 57 nucleotides
GFF88 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 103,876 to 105,270
GFF88
GFF89 - hypothetical protein, at 105,276 to 106,388
GFF89
GFF90 - Arsenate reductase (EC 1.20.4.1), at 106,450 to 106,944
GFF90
GFF91 - General secretion pathway protein J, at 107,002 to 107,619
GFF91
Position (kb) 105
106
107 Strain fitness (log2 ratio) -2
-1
0
1 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.569 kb on + strand, within GFF88 at 104.570 kb on - strand, within GFF88 at 104.570 kb on - strand, within GFF88 at 104.604 kb on + strand, within GFF88 at 104.604 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.740 kb on + strand, within GFF88 at 104.741 kb on - strand, within GFF88 at 104.741 kb on - strand, within GFF88 at 104.746 kb on + strand, within GFF88 at 104.857 kb on + strand, within GFF88 at 104.943 kb on + strand, within GFF88 at 105.100 kb on + strand, within GFF88 at 105.100 kb on + strand, within GFF88 at 105.101 kb on - strand, within GFF88 at 105.256 kb on + strand at 105.256 kb on + strand at 105.257 kb on - strand at 105.432 kb on - strand, within GFF89 at 105.710 kb on + strand, within GFF89 at 106.460 kb on + strand at 106.460 kb on + strand at 106.460 kb on + strand at 106.461 kb on - strand at 106.461 kb on - strand at 106.955 kb on + strand at 106.955 kb on + strand at 106.957 kb on + strand at 106.957 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 104,335 + GFF88 0.33 -0.1 104,335 + GFF88 0.33 +0.2 104,335 + GFF88 0.33 -0.4 104,335 + GFF88 0.33 -0.7 104,336 - GFF88 0.33 -0.3 104,336 - GFF88 0.33 -0.1 104,336 - GFF88 0.33 +0.4 104,336 - GFF88 0.33 -2.7 104,569 + GFF88 0.50 -1.5 104,570 - GFF88 0.50 -0.0 104,570 - GFF88 0.50 -0.6 104,604 + GFF88 0.52 +0.2 104,604 + GFF88 0.52 -0.6 104,712 + GFF88 0.60 -0.3 104,712 + GFF88 0.60 -0.3 104,712 + GFF88 0.60 +0.8 104,713 - GFF88 0.60 -0.5 104,713 - GFF88 0.60 +0.4 104,713 - GFF88 0.60 +0.2 104,713 - GFF88 0.60 -0.0 104,740 + GFF88 0.62 -1.2 104,741 - GFF88 0.62 +0.5 104,741 - GFF88 0.62 +0.2 104,746 + GFF88 0.62 -0.7 104,857 + GFF88 0.70 +0.8 104,943 + GFF88 0.76 -0.1 105,100 + GFF88 0.88 -0.2 105,100 + GFF88 0.88 -0.5 105,101 - GFF88 0.88 -0.6 105,256 + -0.4 105,256 + -1.2 105,257 - +1.0 105,432 - GFF89 0.14 -0.4 105,710 + GFF89 0.39 -1.0 106,460 + +1.4 106,460 + -0.2 106,460 + -0.1 106,461 - -0.5 106,461 - -0.0 106,955 + -0.5 106,955 + -0.2 106,957 + +0.2 106,957 + -0.8
Or see this region's nucleotide sequence