Strain Fitness in Variovorax sp. SCN45 around GFF879

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF877 and GFF878 are separated by 112 nucleotidesGFF878 and GFF879 are separated by 228 nucleotidesGFF879 and GFF880 are separated by 45 nucleotidesGFF880 and GFF881 are separated by 47 nucleotides GFF877 - putative membrane protein, at 186,506 to 187,498 GFF877 GFF878 - COGs COG2343, at 187,611 to 188,000 GFF878 GFF879 - BUG/TctC family periplasmic protein, at 188,229 to 189,305 GFF879 GFF880 - conserved hypothetical protein, at 189,351 to 190,094 GFF880 GFF881 - Transcriptional regulator ligR, LysR family, at 190,142 to 191,065 GFF881 Position (kb) 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 187.388 kb on + strand, within GFF877at 187.476 kb on + strandat 187.476 kb on + strandat 187.651 kb on + strand, within GFF878at 187.691 kb on - strand, within GFF878at 187.702 kb on + strand, within GFF878at 187.702 kb on + strand, within GFF878at 187.703 kb on - strand, within GFF878at 187.750 kb on + strand, within GFF878at 187.750 kb on + strand, within GFF878at 187.751 kb on - strand, within GFF878at 187.751 kb on - strand, within GFF878at 187.753 kb on + strand, within GFF878at 187.754 kb on - strand, within GFF878at 187.754 kb on - strand, within GFF878at 187.771 kb on + strand, within GFF878at 187.772 kb on - strand, within GFF878at 187.772 kb on - strand, within GFF878at 187.780 kb on + strand, within GFF878at 187.780 kb on + strand, within GFF878at 187.781 kb on - strand, within GFF878at 187.837 kb on + strand, within GFF878at 187.837 kb on + strand, within GFF878at 187.837 kb on + strand, within GFF878at 187.837 kb on + strand, within GFF878at 187.837 kb on + strand, within GFF878at 187.838 kb on - strand, within GFF878at 187.838 kb on - strand, within GFF878at 187.838 kb on - strand, within GFF878at 187.838 kb on - strand, within GFF878at 188.212 kb on + strandat 188.212 kb on + strandat 188.228 kb on - strandat 188.589 kb on + strand, within GFF879at 188.589 kb on + strand, within GFF879at 188.634 kb on + strand, within GFF879at 188.634 kb on + strand, within GFF879at 188.634 kb on + strand, within GFF879at 188.635 kb on - strand, within GFF879at 188.635 kb on - strand, within GFF879at 188.635 kb on - strand, within GFF879at 188.640 kb on + strand, within GFF879at 188.640 kb on + strand, within GFF879at 188.641 kb on - strand, within GFF879at 188.641 kb on - strand, within GFF879at 188.641 kb on - strand, within GFF879at 188.641 kb on - strand, within GFF879at 188.641 kb on - strand, within GFF879at 188.641 kb on - strand, within GFF879at 188.793 kb on + strand, within GFF879at 188.794 kb on - strand, within GFF879at 188.794 kb on - strand, within GFF879at 188.880 kb on + strand, within GFF879at 189.124 kb on + strand, within GFF879at 189.125 kb on - strand, within GFF879at 189.125 kb on - strand, within GFF879at 189.125 kb on - strand, within GFF879at 189.393 kb on + strandat 189.393 kb on + strandat 189.393 kb on + strandat 189.394 kb on - strandat 189.394 kb on - strandat 189.394 kb on - strandat 189.394 kb on - strandat 189.394 kb on - strandat 189.394 kb on - strandat 189.394 kb on - strandat 189.394 kb on - strandat 189.419 kb on + strandat 189.419 kb on + strandat 189.419 kb on + strandat 189.420 kb on - strandat 189.582 kb on + strand, within GFF880at 189.583 kb on - strand, within GFF880at 189.583 kb on - strand, within GFF880at 189.583 kb on - strand, within GFF880at 189.652 kb on - strand, within GFF880at 189.652 kb on - strand, within GFF880at 189.840 kb on + strand, within GFF880at 189.882 kb on + strand, within GFF880at 189.882 kb on + strand, within GFF880at 189.882 kb on + strand, within GFF880at 190.074 kb on - strandat 190.102 kb on - strandat 190.102 kb on - strandat 190.163 kb on + strandat 190.163 kb on + strandat 190.164 kb on - strandat 190.164 kb on - strandat 190.164 kb on - strandat 190.164 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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187,388 + GFF877 0.89 -0.2
187,476 + -0.7
187,476 + +0.3
187,651 + GFF878 0.10 -0.5
187,691 - GFF878 0.21 +0.6
187,702 + GFF878 0.23 -1.7
187,702 + GFF878 0.23 -1.0
187,703 - GFF878 0.24 +0.2
187,750 + GFF878 0.36 +0.0
187,750 + GFF878 0.36 +0.5
187,751 - GFF878 0.36 +0.4
187,751 - GFF878 0.36 -0.6
187,753 + GFF878 0.36 -0.2
187,754 - GFF878 0.37 +0.2
187,754 - GFF878 0.37 +0.9
187,771 + GFF878 0.41 -0.0
187,772 - GFF878 0.41 +0.6
187,772 - GFF878 0.41 -1.5
187,780 + GFF878 0.43 -0.5
187,780 + GFF878 0.43 -0.4
187,781 - GFF878 0.44 -0.4
187,837 + GFF878 0.58 +1.8
187,837 + GFF878 0.58 +0.1
187,837 + GFF878 0.58 -0.5
187,837 + GFF878 0.58 -0.5
187,837 + GFF878 0.58 -2.9
187,838 - GFF878 0.58 -0.4
187,838 - GFF878 0.58 -0.1
187,838 - GFF878 0.58 -0.2
187,838 - GFF878 0.58 +0.6
188,212 + -0.4
188,212 + -0.2
188,228 - +0.1
188,589 + GFF879 0.33 +0.5
188,589 + GFF879 0.33 -0.2
188,634 + GFF879 0.38 -0.0
188,634 + GFF879 0.38 +1.2
188,634 + GFF879 0.38 -0.4
188,635 - GFF879 0.38 +0.4
188,635 - GFF879 0.38 -0.7
188,635 - GFF879 0.38 -0.4
188,640 + GFF879 0.38 -0.7
188,640 + GFF879 0.38 +0.3
188,641 - GFF879 0.38 +0.3
188,641 - GFF879 0.38 +3.8
188,641 - GFF879 0.38 +1.0
188,641 - GFF879 0.38 +0.5
188,641 - GFF879 0.38 -0.5
188,641 - GFF879 0.38 +0.1
188,793 + GFF879 0.52 -0.2
188,794 - GFF879 0.52 +0.5
188,794 - GFF879 0.52 -0.2
188,880 + GFF879 0.60 +1.0
189,124 + GFF879 0.83 -1.1
189,125 - GFF879 0.83 +1.4
189,125 - GFF879 0.83 -2.1
189,125 - GFF879 0.83 +0.8
189,393 + -0.8
189,393 + -1.4
189,393 + +0.4
189,394 - -0.2
189,394 - +0.2
189,394 - -0.2
189,394 - -0.5
189,394 - -0.4
189,394 - -0.5
189,394 - -0.5
189,394 - -0.3
189,419 + +1.2
189,419 + -1.0
189,419 + -0.7
189,420 - -0.1
189,582 + GFF880 0.31 -0.2
189,583 - GFF880 0.31 -0.8
189,583 - GFF880 0.31 +0.8
189,583 - GFF880 0.31 +1.5
189,652 - GFF880 0.40 -0.4
189,652 - GFF880 0.40 +1.1
189,840 + GFF880 0.66 -0.2
189,882 + GFF880 0.71 +0.2
189,882 + GFF880 0.71 +0.5
189,882 + GFF880 0.71 -0.0
190,074 - -0.4
190,102 - -1.5
190,102 - +0.0
190,163 + -0.8
190,163 + -0.0
190,164 - +0.2
190,164 - -1.3
190,164 - +0.2
190,164 - +0.3

Or see this region's nucleotide sequence