Strain Fitness in Variovorax sp. SCN45 around GFF823

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF822 and GFF823 are separated by 136 nucleotidesGFF823 and GFF824 are separated by 5 nucleotidesGFF824 and GFF825 are separated by 164 nucleotidesGFF825 and GFF826 are separated by 173 nucleotides GFF822 - Na+/H+-dicarboxylate symporter, at 126,665 to 128,008 GFF822 GFF823 - Inner membrane protein YbaL, KefB/KefC family, at 128,145 to 129,851 GFF823 GFF824 - hypothetical protein, at 129,857 to 130,261 GFF824 GFF825 - no description, at 130,426 to 130,653 GFF825 GFF826 - no description, at 130,827 to 130,979 GFF826 Position (kb) 128 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.262 kb on + strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.263 kb on - strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.370 kb on + strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.371 kb on - strand, within GFF822at 127.374 kb on + strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.455 kb on - strand, within GFF822at 127.584 kb on - strand, within GFF822at 127.584 kb on - strand, within GFF822at 127.584 kb on - strand, within GFF822at 127.584 kb on - strand, within GFF822at 127.584 kb on - strand, within GFF822at 128.007 kb on - strandat 128.111 kb on + strandat 128.124 kb on + strandat 128.250 kb on + strandat 128.250 kb on + strandat 128.250 kb on + strandat 129.417 kb on + strand, within GFF823at 129.417 kb on + strand, within GFF823at 129.417 kb on + strand, within GFF823at 129.417 kb on + strand, within GFF823at 129.417 kb on + strand, within GFF823at 129.417 kb on + strand, within GFF823at 129.417 kb on + strand, within GFF823at 129.417 kb on + strand, within GFF823at 129.418 kb on - strand, within GFF823at 129.418 kb on - strand, within GFF823at 129.418 kb on - strand, within GFF823at 129.418 kb on - strand, within GFF823at 129.418 kb on - strand, within GFF823at 129.418 kb on - strand, within GFF823at 129.418 kb on - strand, within GFF823at 129.447 kb on + strand, within GFF823at 129.448 kb on - strand, within GFF823at 129.501 kb on + strand, within GFF823at 129.502 kb on - strand, within GFF823at 129.502 kb on - strand, within GFF823at 129.502 kb on - strand, within GFF823at 129.502 kb on - strand, within GFF823at 129.976 kb on + strand, within GFF824at 129.976 kb on + strand, within GFF824at 129.976 kb on + strand, within GFF824at 129.977 kb on - strand, within GFF824at 129.977 kb on - strand, within GFF824at 130.002 kb on + strand, within GFF824at 130.002 kb on + strand, within GFF824at 130.002 kb on + strand, within GFF824at 130.002 kb on + strand, within GFF824at 130.003 kb on - strand, within GFF824at 130.003 kb on - strand, within GFF824at 130.003 kb on - strand, within GFF824at 130.107 kb on + strand, within GFF824at 130.107 kb on + strand, within GFF824at 130.107 kb on + strand, within GFF824at 130.107 kb on + strand, within GFF824at 130.108 kb on - strand, within GFF824at 130.108 kb on - strand, within GFF824at 130.108 kb on - strand, within GFF824at 130.108 kb on - strand, within GFF824at 130.206 kb on + strand, within GFF824at 130.207 kb on - strand, within GFF824at 130.207 kb on - strand, within GFF824at 130.319 kb on + strandat 130.319 kb on + strandat 130.319 kb on + strandat 130.319 kb on + strandat 130.320 kb on - strandat 130.320 kb on - strandat 130.320 kb on - strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.327 kb on + strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.328 kb on - strandat 130.353 kb on - strandat 130.353 kb on - strandat 130.353 kb on - strandat 130.353 kb on - strandat 130.353 kb on - strandat 130.416 kb on - strandat 130.416 kb on - strandat 130.483 kb on + strand, within GFF825at 130.483 kb on + strand, within GFF825at 130.484 kb on - strand, within GFF825at 130.484 kb on - strand, within GFF825at 130.484 kb on - strand, within GFF825at 130.484 kb on - strand, within GFF825at 130.484 kb on - strand, within GFF825at 130.537 kb on + strand, within GFF825at 130.537 kb on + strand, within GFF825at 130.537 kb on + strand, within GFF825at 130.537 kb on + strand, within GFF825at 130.537 kb on + strand, within GFF825at 130.537 kb on + strand, within GFF825at 130.538 kb on - strand, within GFF825at 130.538 kb on - strand, within GFF825at 130.538 kb on - strand, within GFF825at 130.538 kb on - strand, within GFF825at 130.538 kb on - strand, within GFF825at 130.538 kb on - strand, within GFF825at 130.538 kb on - strand, within GFF825at 130.538 kb on - strand, within GFF825at 130.538 kb on - strand, within GFF825at 130.567 kb on + strand, within GFF825at 130.576 kb on + strand, within GFF825at 130.577 kb on - strand, within GFF825at 130.577 kb on - strand, within GFF825at 130.577 kb on - strand, within GFF825at 130.649 kb on + strandat 130.651 kb on + strandat 130.651 kb on + strandat 130.651 kb on + strandat 130.651 kb on + strandat 130.652 kb on - strandat 130.652 kb on - strandat 130.652 kb on - strandat 130.652 kb on - strandat 130.652 kb on - strandat 130.652 kb on - strandat 130.652 kb on - strandat 130.784 kb on + strandat 130.784 kb on + strandat 130.784 kb on + strandat 130.784 kb on + strandat 130.785 kb on - strandat 130.785 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
127,262 + GFF822 0.44 -1.0
127,262 + GFF822 0.44 +0.2
127,262 + GFF822 0.44 +2.4
127,262 + GFF822 0.44 +0.2
127,262 + GFF822 0.44 -0.2
127,262 + GFF822 0.44 +0.4
127,262 + GFF822 0.44 +0.5
127,262 + GFF822 0.44 +0.8
127,262 + GFF822 0.44 -0.8
127,262 + GFF822 0.44 -1.2
127,262 + GFF822 0.44 -0.7
127,263 - GFF822 0.44 -3.0
127,263 - GFF822 0.44 -0.6
127,263 - GFF822 0.44 -0.9
127,263 - GFF822 0.44 -0.6
127,263 - GFF822 0.44 +0.4
127,263 - GFF822 0.44 -0.2
127,263 - GFF822 0.44 -0.1
127,263 - GFF822 0.44 -0.1
127,263 - GFF822 0.44 -0.2
127,263 - GFF822 0.44 -0.8
127,370 + GFF822 0.52 +0.7
127,370 + GFF822 0.52 -0.1
127,370 + GFF822 0.52 -0.7
127,370 + GFF822 0.52 -0.7
127,371 - GFF822 0.53 -0.4
127,371 - GFF822 0.53 +0.0
127,371 - GFF822 0.53 -1.6
127,371 - GFF822 0.53 -0.6
127,371 - GFF822 0.53 -0.3
127,371 - GFF822 0.53 +0.6
127,374 + GFF822 0.53 -0.2
127,455 - GFF822 0.59 -0.6
127,455 - GFF822 0.59 -0.1
127,455 - GFF822 0.59 +0.8
127,455 - GFF822 0.59 -0.1
127,455 - GFF822 0.59 -0.9
127,455 - GFF822 0.59 +1.2
127,584 - GFF822 0.68 -0.2
127,584 - GFF822 0.68 -0.6
127,584 - GFF822 0.68 -0.7
127,584 - GFF822 0.68 -0.6
127,584 - GFF822 0.68 +0.2
128,007 - +0.9
128,111 + +1.8
128,124 + -0.4
128,250 + -0.5
128,250 + -0.2
128,250 + -0.1
129,417 + GFF823 0.75 -0.1
129,417 + GFF823 0.75 +0.8
129,417 + GFF823 0.75 -0.0
129,417 + GFF823 0.75 +0.2
129,417 + GFF823 0.75 -0.3
129,417 + GFF823 0.75 +0.6
129,417 + GFF823 0.75 -0.2
129,417 + GFF823 0.75 +0.1
129,418 - GFF823 0.75 -0.4
129,418 - GFF823 0.75 -0.6
129,418 - GFF823 0.75 -1.0
129,418 - GFF823 0.75 -0.8
129,418 - GFF823 0.75 +0.4
129,418 - GFF823 0.75 -1.8
129,418 - GFF823 0.75 -1.2
129,447 + GFF823 0.76 -0.6
129,448 - GFF823 0.76 -0.4
129,501 + GFF823 0.79 -0.6
129,502 - GFF823 0.79 +0.2
129,502 - GFF823 0.79 +1.4
129,502 - GFF823 0.79 -0.0
129,502 - GFF823 0.79 -0.8
129,976 + GFF824 0.29 -1.0
129,976 + GFF824 0.29 -0.5
129,976 + GFF824 0.29 -0.2
129,977 - GFF824 0.30 -1.4
129,977 - GFF824 0.30 -0.0
130,002 + GFF824 0.36 +0.5
130,002 + GFF824 0.36 -0.4
130,002 + GFF824 0.36 +0.5
130,002 + GFF824 0.36 -1.3
130,003 - GFF824 0.36 -0.5
130,003 - GFF824 0.36 +1.4
130,003 - GFF824 0.36 -1.0
130,107 + GFF824 0.62 +0.4
130,107 + GFF824 0.62 -0.4
130,107 + GFF824 0.62 -0.8
130,107 + GFF824 0.62 +1.0
130,108 - GFF824 0.62 -0.8
130,108 - GFF824 0.62 +0.8
130,108 - GFF824 0.62 -1.5
130,108 - GFF824 0.62 -0.3
130,206 + GFF824 0.86 -0.8
130,207 - GFF824 0.86 -0.6
130,207 - GFF824 0.86 -0.3
130,319 + +1.4
130,319 + +0.1
130,319 + -0.7
130,319 + +0.1
130,320 - +0.3
130,320 - +0.5
130,320 - -0.8
130,327 + -0.7
130,327 + -0.2
130,327 + +0.2
130,327 + +0.5
130,327 + +0.0
130,327 + -0.9
130,327 + -1.6
130,327 + -0.4
130,327 + -0.1
130,327 + +0.3
130,327 + -0.4
130,327 + -0.4
130,327 + +2.8
130,328 - +0.1
130,328 - +0.1
130,328 - -1.6
130,328 - +1.0
130,328 - -0.6
130,328 - -1.5
130,328 - -0.5
130,328 - -0.2
130,328 - +0.9
130,328 - -0.3
130,328 - -1.1
130,328 - +1.4
130,328 - +0.3
130,353 - +0.8
130,353 - -0.7
130,353 - +0.0
130,353 - -0.2
130,353 - -0.8
130,416 - -1.0
130,416 - -0.2
130,483 + GFF825 0.25 -0.4
130,483 + GFF825 0.25 +0.2
130,484 - GFF825 0.25 +0.5
130,484 - GFF825 0.25 +0.8
130,484 - GFF825 0.25 +0.3
130,484 - GFF825 0.25 -0.8
130,484 - GFF825 0.25 +0.2
130,537 + GFF825 0.49 +1.1
130,537 + GFF825 0.49 -1.4
130,537 + GFF825 0.49 -0.8
130,537 + GFF825 0.49 +0.1
130,537 + GFF825 0.49 -0.1
130,537 + GFF825 0.49 +0.4
130,538 - GFF825 0.49 -0.9
130,538 - GFF825 0.49 -0.1
130,538 - GFF825 0.49 -0.4
130,538 - GFF825 0.49 +1.4
130,538 - GFF825 0.49 +0.3
130,538 - GFF825 0.49 -0.2
130,538 - GFF825 0.49 +0.2
130,538 - GFF825 0.49 +0.6
130,538 - GFF825 0.49 +0.1
130,567 + GFF825 0.62 +1.8
130,576 + GFF825 0.66 +0.4
130,577 - GFF825 0.66 -0.1
130,577 - GFF825 0.66 -0.8
130,577 - GFF825 0.66 -0.6
130,649 + +1.8
130,651 + -1.2
130,651 + +0.0
130,651 + +2.4
130,651 + -1.0
130,652 - +0.7
130,652 - +0.0
130,652 - +1.6
130,652 - +0.1
130,652 - -1.7
130,652 - -0.7
130,652 - +0.4
130,784 + +0.5
130,784 + -0.2
130,784 + +0.1
130,784 + -0.4
130,785 - -0.4
130,785 - +0.0

Or see this region's nucleotide sequence