Strain Fitness in Variovorax sp. SCN45 around GFF797

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF796 and GFF797 are separated by 73 nucleotidesGFF797 and GFF798 are separated by 78 nucleotides GFF796 - Transcriptional activator MetR, at 101,479 to 102,390 GFF796 GFF797 - no description, at 102,464 to 102,694 GFF797 GFF798 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 102,773 to 104,401 GFF798 Position (kb) 102 103Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 101.475 kb on - strandat 101.668 kb on + strand, within GFF796at 101.668 kb on + strand, within GFF796at 101.668 kb on + strand, within GFF796at 101.669 kb on - strand, within GFF796at 101.788 kb on + strand, within GFF796at 101.788 kb on + strand, within GFF796at 101.788 kb on + strand, within GFF796at 101.789 kb on - strand, within GFF796at 101.789 kb on - strand, within GFF796at 101.819 kb on - strand, within GFF796at 101.932 kb on + strand, within GFF796at 101.932 kb on + strand, within GFF796at 101.932 kb on + strand, within GFF796at 101.950 kb on + strand, within GFF796at 101.950 kb on + strand, within GFF796at 101.950 kb on + strand, within GFF796at 101.950 kb on + strand, within GFF796at 101.950 kb on + strand, within GFF796at 101.951 kb on - strand, within GFF796at 101.951 kb on - strand, within GFF796at 101.951 kb on - strand, within GFF796at 101.951 kb on - strand, within GFF796at 101.968 kb on + strand, within GFF796at 101.968 kb on + strand, within GFF796at 101.969 kb on - strand, within GFF796at 102.062 kb on - strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.091 kb on + strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.092 kb on - strand, within GFF796at 102.223 kb on + strand, within GFF796at 102.223 kb on + strand, within GFF796at 102.224 kb on - strand, within GFF796at 102.224 kb on - strand, within GFF796at 102.224 kb on - strand, within GFF796at 102.224 kb on - strand, within GFF796at 102.224 kb on - strand, within GFF796at 102.322 kb on + strandat 102.405 kb on + strandat 102.405 kb on + strandat 102.406 kb on - strandat 102.406 kb on - strandat 102.412 kb on + strandat 102.412 kb on + strandat 102.412 kb on + strandat 102.412 kb on + strandat 102.412 kb on + strandat 102.413 kb on - strandat 102.413 kb on - strandat 102.449 kb on + strandat 102.449 kb on + strandat 102.449 kb on + strandat 102.450 kb on - strandat 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.545 kb on + strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.546 kb on - strand, within GFF797at 102.733 kb on + strandat 102.733 kb on + strandat 102.734 kb on - strandat 102.804 kb on + strandat 102.842 kb on - strandat 102.842 kb on - strandat 103.070 kb on + strand, within GFF798at 103.070 kb on + strand, within GFF798at 103.070 kb on + strand, within GFF798at 103.070 kb on + strand, within GFF798at 103.070 kb on + strand, within GFF798at 103.070 kb on + strand, within GFF798at 103.071 kb on - strand, within GFF798at 103.071 kb on - strand, within GFF798at 103.071 kb on - strand, within GFF798at 103.071 kb on - strand, within GFF798at 103.071 kb on - strand, within GFF798at 103.071 kb on - strand, within GFF798at 103.071 kb on - strand, within GFF798at 103.071 kb on - strand, within GFF798at 103.071 kb on - strand, within GFF798at 103.073 kb on + strand, within GFF798at 103.073 kb on + strand, within GFF798at 103.073 kb on + strand, within GFF798at 103.073 kb on + strand, within GFF798at 103.074 kb on - strand, within GFF798at 103.074 kb on - strand, within GFF798at 103.074 kb on - strand, within GFF798at 103.074 kb on - strand, within GFF798at 103.074 kb on - strand, within GFF798at 103.074 kb on - strand, within GFF798at 103.074 kb on - strand, within GFF798at 103.103 kb on + strand, within GFF798at 103.104 kb on - strand, within GFF798at 103.172 kb on + strand, within GFF798at 103.172 kb on + strand, within GFF798at 103.173 kb on - strand, within GFF798at 103.173 kb on - strand, within GFF798at 103.173 kb on - strand, within GFF798at 103.337 kb on + strand, within GFF798at 103.337 kb on + strand, within GFF798at 103.337 kb on + strand, within GFF798at 103.337 kb on + strand, within GFF798at 103.337 kb on + strand, within GFF798at 103.337 kb on + strand, within GFF798at 103.337 kb on + strand, within GFF798at 103.337 kb on + strand, within GFF798at 103.337 kb on + strand, within GFF798at 103.338 kb on - strand, within GFF798at 103.338 kb on - strand, within GFF798at 103.338 kb on - strand, within GFF798at 103.338 kb on - strand, within GFF798at 103.338 kb on - strand, within GFF798at 103.338 kb on - strand, within GFF798at 103.392 kb on - strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.484 kb on + strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.485 kb on - strand, within GFF798at 103.499 kb on + strand, within GFF798at 103.499 kb on + strand, within GFF798at 103.499 kb on + strand, within GFF798at 103.499 kb on + strand, within GFF798at 103.499 kb on + strand, within GFF798at 103.500 kb on - strand, within GFF798at 103.500 kb on - strand, within GFF798at 103.500 kb on - strand, within GFF798at 103.500 kb on - strand, within GFF798at 103.500 kb on - strand, within GFF798at 103.505 kb on + strand, within GFF798at 103.506 kb on - strand, within GFF798at 103.506 kb on - strand, within GFF798

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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101,475 - +1.5
101,668 + GFF796 0.21 +0.3
101,668 + GFF796 0.21 +0.0
101,668 + GFF796 0.21 -0.2
101,669 - GFF796 0.21 +0.1
101,788 + GFF796 0.34 -0.3
101,788 + GFF796 0.34 +2.4
101,788 + GFF796 0.34 -0.4
101,789 - GFF796 0.34 -0.0
101,789 - GFF796 0.34 -1.2
101,819 - GFF796 0.37 -0.1
101,932 + GFF796 0.50 -0.4
101,932 + GFF796 0.50 +0.1
101,932 + GFF796 0.50 +0.3
101,950 + GFF796 0.52 -0.4
101,950 + GFF796 0.52 -0.7
101,950 + GFF796 0.52 +0.4
101,950 + GFF796 0.52 -1.8
101,950 + GFF796 0.52 +0.6
101,951 - GFF796 0.52 -0.8
101,951 - GFF796 0.52 +1.8
101,951 - GFF796 0.52 -0.5
101,951 - GFF796 0.52 +1.0
101,968 + GFF796 0.54 -0.7
101,968 + GFF796 0.54 -0.8
101,969 - GFF796 0.54 -0.8
102,062 - GFF796 0.64 -0.3
102,091 + GFF796 0.67 +0.0
102,091 + GFF796 0.67 -1.0
102,091 + GFF796 0.67 +2.1
102,091 + GFF796 0.67 +1.4
102,091 + GFF796 0.67 -0.5
102,091 + GFF796 0.67 -1.0
102,091 + GFF796 0.67 +0.8
102,091 + GFF796 0.67 +0.4
102,091 + GFF796 0.67 -1.8
102,091 + GFF796 0.67 +0.2
102,091 + GFF796 0.67 +1.1
102,091 + GFF796 0.67 +0.8
102,091 + GFF796 0.67 -1.3
102,091 + GFF796 0.67 -0.8
102,091 + GFF796 0.67 -0.1
102,091 + GFF796 0.67 +1.2
102,091 + GFF796 0.67 -0.6
102,091 + GFF796 0.67 +2.2
102,091 + GFF796 0.67 +0.1
102,091 + GFF796 0.67 +0.9
102,091 + GFF796 0.67 +0.6
102,091 + GFF796 0.67 +0.1
102,091 + GFF796 0.67 -0.7
102,091 + GFF796 0.67 +0.3
102,091 + GFF796 0.67 -0.3
102,091 + GFF796 0.67 +0.4
102,091 + GFF796 0.67 -0.7
102,092 - GFF796 0.67 -0.0
102,092 - GFF796 0.67 -0.8
102,092 - GFF796 0.67 -0.9
102,092 - GFF796 0.67 +0.6
102,092 - GFF796 0.67 -2.6
102,092 - GFF796 0.67 -0.8
102,092 - GFF796 0.67 +0.4
102,092 - GFF796 0.67 +0.0
102,092 - GFF796 0.67 +1.4
102,092 - GFF796 0.67 -0.3
102,092 - GFF796 0.67 -0.8
102,092 - GFF796 0.67 -0.9
102,092 - GFF796 0.67 -0.5
102,092 - GFF796 0.67 -0.7
102,092 - GFF796 0.67 -0.1
102,092 - GFF796 0.67 -0.4
102,092 - GFF796 0.67 -1.6
102,092 - GFF796 0.67 +0.8
102,092 - GFF796 0.67 +1.1
102,092 - GFF796 0.67 +4.5
102,092 - GFF796 0.67 +1.8
102,092 - GFF796 0.67 +0.4
102,092 - GFF796 0.67 +0.4
102,092 - GFF796 0.67 -0.4
102,092 - GFF796 0.67 +0.6
102,092 - GFF796 0.67 +1.0
102,092 - GFF796 0.67 -0.2
102,092 - GFF796 0.67 -0.7
102,092 - GFF796 0.67 -0.7
102,092 - GFF796 0.67 -0.0
102,092 - GFF796 0.67 -1.0
102,092 - GFF796 0.67 -0.9
102,092 - GFF796 0.67 +0.3
102,223 + GFF796 0.82 +0.2
102,223 + GFF796 0.82 -0.8
102,224 - GFF796 0.82 -0.2
102,224 - GFF796 0.82 +0.8
102,224 - GFF796 0.82 +0.1
102,224 - GFF796 0.82 -0.1
102,224 - GFF796 0.82 -1.0
102,322 + -0.0
102,405 + -0.2
102,405 + -0.1
102,406 - +0.2
102,406 - -2.2
102,412 + -0.4
102,412 + -0.2
102,412 + -0.1
102,412 + -0.5
102,412 + +0.9
102,413 - +0.8
102,413 - -0.1
102,449 + +0.8
102,449 + +0.2
102,449 + -1.4
102,450 - +0.4
102,545 + GFF797 0.35 -0.4
102,545 + GFF797 0.35 +0.6
102,545 + GFF797 0.35 +1.0
102,545 + GFF797 0.35 +0.0
102,545 + GFF797 0.35 +0.4
102,545 + GFF797 0.35 -1.2
102,545 + GFF797 0.35 +1.0
102,545 + GFF797 0.35 +1.0
102,545 + GFF797 0.35 -0.2
102,545 + GFF797 0.35 +0.1
102,545 + GFF797 0.35 -0.2
102,545 + GFF797 0.35 -1.8
102,545 + GFF797 0.35 +0.0
102,545 + GFF797 0.35 -1.0
102,545 + GFF797 0.35 -0.6
102,545 + GFF797 0.35 -0.2
102,545 + GFF797 0.35 -0.2
102,545 + GFF797 0.35 +0.1
102,545 + GFF797 0.35 -0.2
102,546 - GFF797 0.35 +0.2
102,546 - GFF797 0.35 -1.0
102,546 - GFF797 0.35 -0.4
102,546 - GFF797 0.35 +0.2
102,546 - GFF797 0.35 +0.0
102,546 - GFF797 0.35 -0.1
102,546 - GFF797 0.35 -1.2
102,546 - GFF797 0.35 +0.5
102,546 - GFF797 0.35 -0.1
102,546 - GFF797 0.35 -0.1
102,546 - GFF797 0.35 -0.4
102,546 - GFF797 0.35 -0.1
102,546 - GFF797 0.35 -0.4
102,546 - GFF797 0.35 +0.1
102,546 - GFF797 0.35 -0.6
102,546 - GFF797 0.35 +1.2
102,546 - GFF797 0.35 -0.7
102,546 - GFF797 0.35 -0.2
102,546 - GFF797 0.35 +2.0
102,546 - GFF797 0.35 -0.2
102,546 - GFF797 0.35 +0.8
102,546 - GFF797 0.35 -0.9
102,546 - GFF797 0.35 +0.4
102,546 - GFF797 0.35 -0.2
102,733 + +0.2
102,733 + -0.8
102,734 - +0.5
102,804 + +0.6
102,842 - -0.6
102,842 - -0.4
103,070 + GFF798 0.18 -0.5
103,070 + GFF798 0.18 -1.6
103,070 + GFF798 0.18 -0.2
103,070 + GFF798 0.18 +0.1
103,070 + GFF798 0.18 -1.4
103,070 + GFF798 0.18 -1.2
103,071 - GFF798 0.18 -0.4
103,071 - GFF798 0.18 -0.3
103,071 - GFF798 0.18 +3.4
103,071 - GFF798 0.18 -0.4
103,071 - GFF798 0.18 +1.1
103,071 - GFF798 0.18 -0.5
103,071 - GFF798 0.18 +0.8
103,071 - GFF798 0.18 -0.9
103,071 - GFF798 0.18 -0.1
103,073 + GFF798 0.18 -0.2
103,073 + GFF798 0.18 -0.6
103,073 + GFF798 0.18 -0.3
103,073 + GFF798 0.18 +0.3
103,074 - GFF798 0.18 -0.6
103,074 - GFF798 0.18 +1.4
103,074 - GFF798 0.18 -2.2
103,074 - GFF798 0.18 +2.5
103,074 - GFF798 0.18 -0.3
103,074 - GFF798 0.18 +0.4
103,074 - GFF798 0.18 +0.2
103,103 + GFF798 0.20 +1.4
103,104 - GFF798 0.20 -0.6
103,172 + GFF798 0.24 +0.9
103,172 + GFF798 0.24 -1.1
103,173 - GFF798 0.25 -0.8
103,173 - GFF798 0.25 -1.2
103,173 - GFF798 0.25 +0.2
103,337 + GFF798 0.35 -0.2
103,337 + GFF798 0.35 -0.2
103,337 + GFF798 0.35 -0.4
103,337 + GFF798 0.35 +0.2
103,337 + GFF798 0.35 -0.1
103,337 + GFF798 0.35 -0.9
103,337 + GFF798 0.35 +1.2
103,337 + GFF798 0.35 -0.1
103,337 + GFF798 0.35 +0.2
103,338 - GFF798 0.35 +0.6
103,338 - GFF798 0.35 -0.3
103,338 - GFF798 0.35 -0.2
103,338 - GFF798 0.35 +0.2
103,338 - GFF798 0.35 -0.6
103,338 - GFF798 0.35 +0.0
103,392 - GFF798 0.38 -0.4
103,484 + GFF798 0.44 -0.3
103,484 + GFF798 0.44 +1.4
103,484 + GFF798 0.44 -0.1
103,484 + GFF798 0.44 +0.4
103,484 + GFF798 0.44 -0.1
103,484 + GFF798 0.44 -0.2
103,484 + GFF798 0.44 -0.2
103,484 + GFF798 0.44 +0.3
103,484 + GFF798 0.44 -0.2
103,484 + GFF798 0.44 +0.9
103,484 + GFF798 0.44 -0.6
103,484 + GFF798 0.44 -0.3
103,484 + GFF798 0.44 +0.1
103,484 + GFF798 0.44 +0.7
103,485 - GFF798 0.44 +1.3
103,485 - GFF798 0.44 -1.0
103,485 - GFF798 0.44 +0.8
103,485 - GFF798 0.44 -0.1
103,485 - GFF798 0.44 -1.0
103,485 - GFF798 0.44 -0.6
103,485 - GFF798 0.44 +0.2
103,485 - GFF798 0.44 -0.0
103,485 - GFF798 0.44 -0.7
103,485 - GFF798 0.44 -0.2
103,485 - GFF798 0.44 +0.2
103,485 - GFF798 0.44 -0.8
103,499 + GFF798 0.45 -0.7
103,499 + GFF798 0.45 -1.4
103,499 + GFF798 0.45 +1.1
103,499 + GFF798 0.45 -0.3
103,499 + GFF798 0.45 -0.1
103,500 - GFF798 0.45 +0.1
103,500 - GFF798 0.45 +0.4
103,500 - GFF798 0.45 +0.1
103,500 - GFF798 0.45 -0.3
103,500 - GFF798 0.45 +1.8
103,505 + GFF798 0.45 -0.1
103,506 - GFF798 0.45 +1.3
103,506 - GFF798 0.45 +0.9

Or see this region's nucleotide sequence