Strain Fitness in Variovorax sp. SCN45 around GFF772

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF771 and GFF772 overlap by 11 nucleotidesGFF772 and GFF773 are separated by 61 nucleotidesGFF773 and GFF774 are separated by 32 nucleotidesGFF774 and GFF775 are separated by 99 nucleotides GFF771 - Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141), at 40,846 to 42,714 GFF771 GFF772 - 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) / Malto-oligosyltrehalose synthase (EC 5.4.99.15), at 42,704 to 47,881 GFF772 GFF773 - hypothetical protein, at 47,943 to 48,269 GFF773 GFF774 - no description, at 48,302 to 48,508 GFF774 GFF775 - no description, at 48,608 to 48,874 GFF775 Position (kb) 42 43 44 45 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 41.885 kb on - strand, within GFF771at 41.887 kb on + strand, within GFF771at 41.950 kb on + strand, within GFF771at 42.200 kb on - strand, within GFF771at 42.469 kb on + strand, within GFF771at 42.470 kb on - strand, within GFF771at 43.218 kb on - strandat 43.424 kb on + strand, within GFF772at 43.460 kb on + strand, within GFF772at 43.461 kb on - strand, within GFF772at 43.577 kb on + strand, within GFF772at 43.578 kb on - strand, within GFF772at 43.881 kb on - strand, within GFF772at 43.958 kb on + strand, within GFF772at 43.958 kb on + strand, within GFF772at 43.959 kb on - strand, within GFF772at 43.959 kb on - strand, within GFF772at 44.252 kb on + strand, within GFF772at 44.252 kb on + strand, within GFF772at 44.253 kb on - strand, within GFF772at 44.253 kb on - strand, within GFF772at 44.253 kb on - strand, within GFF772at 44.258 kb on + strand, within GFF772at 44.258 kb on + strand, within GFF772at 44.258 kb on + strand, within GFF772at 44.258 kb on + strand, within GFF772at 44.258 kb on + strand, within GFF772at 44.258 kb on + strand, within GFF772at 44.259 kb on - strand, within GFF772at 44.259 kb on - strand, within GFF772at 44.259 kb on - strand, within GFF772at 44.295 kb on + strand, within GFF772at 44.295 kb on + strand, within GFF772at 44.295 kb on + strand, within GFF772at 44.405 kb on + strand, within GFF772at 44.406 kb on - strand, within GFF772at 44.987 kb on + strand, within GFF772at 44.988 kb on - strand, within GFF772at 45.075 kb on - strand, within GFF772at 45.120 kb on - strand, within GFF772at 45.308 kb on + strand, within GFF772at 45.309 kb on - strand, within GFF772at 45.464 kb on + strand, within GFF772at 45.500 kb on + strand, within GFF772at 45.500 kb on + strand, within GFF772at 45.571 kb on + strand, within GFF772at 45.834 kb on - strand, within GFF772at 45.977 kb on + strand, within GFF772at 45.978 kb on - strand, within GFF772at 45.992 kb on + strand, within GFF772at 45.993 kb on - strand, within GFF772at 46.016 kb on + strand, within GFF772at 46.017 kb on - strand, within GFF772at 46.017 kb on - strand, within GFF772at 46.082 kb on + strand, within GFF772at 46.082 kb on + strand, within GFF772at 46.082 kb on + strand, within GFF772at 46.082 kb on + strand, within GFF772at 46.442 kb on + strand, within GFF772at 46.442 kb on + strand, within GFF772at 46.442 kb on + strand, within GFF772at 46.442 kb on + strand, within GFF772at 46.443 kb on - strand, within GFF772at 46.443 kb on - strand, within GFF772at 46.443 kb on - strand, within GFF772at 46.443 kb on - strand, within GFF772at 46.443 kb on - strand, within GFF772at 46.443 kb on - strand, within GFF772at 46.976 kb on + strand, within GFF772at 46.986 kb on - strand, within GFF772at 46.986 kb on - strand, within GFF772at 46.986 kb on - strand, within GFF772at 47.066 kb on + strand, within GFF772at 47.066 kb on + strand, within GFF772at 47.067 kb on - strand, within GFF772at 47.067 kb on - strand, within GFF772at 47.067 kb on - strand, within GFF772at 47.067 kb on - strand, within GFF772at 47.129 kb on + strand, within GFF772at 47.130 kb on - strand, within GFF772at 47.270 kb on + strand, within GFF772at 47.270 kb on + strand, within GFF772at 47.270 kb on + strand, within GFF772at 47.271 kb on - strand, within GFF772at 47.271 kb on - strand, within GFF772at 47.298 kb on - strand, within GFF772at 47.361 kb on - strand, within GFF772at 47.411 kb on - strandat 47.854 kb on + strandat 47.854 kb on + strandat 47.855 kb on - strandat 47.876 kb on - strandat 47.876 kb on - strandat 47.876 kb on - strandat 47.876 kb on - strandat 48.054 kb on + strand, within GFF773at 48.055 kb on - strand, within GFF773at 48.267 kb on + strandat 48.267 kb on + strandat 48.267 kb on + strandat 48.267 kb on + strandat 48.267 kb on + strandat 48.267 kb on + strandat 48.267 kb on + strandat 48.267 kb on + strandat 48.267 kb on + strandat 48.267 kb on + strandat 48.268 kb on - strandat 48.268 kb on - strandat 48.268 kb on - strandat 48.268 kb on - strandat 48.268 kb on - strandat 48.268 kb on - strandat 48.271 kb on + strandat 48.271 kb on + strandat 48.272 kb on - strandat 48.272 kb on - strandat 48.378 kb on + strand, within GFF774at 48.379 kb on - strand, within GFF774at 48.379 kb on - strand, within GFF774at 48.379 kb on - strand, within GFF774at 48.379 kb on - strand, within GFF774at 48.379 kb on - strand, within GFF774at 48.459 kb on + strand, within GFF774at 48.459 kb on + strand, within GFF774at 48.459 kb on + strand, within GFF774at 48.460 kb on - strand, within GFF774at 48.460 kb on - strand, within GFF774at 48.460 kb on - strand, within GFF774at 48.460 kb on - strand, within GFF774at 48.460 kb on - strand, within GFF774at 48.460 kb on - strand, within GFF774at 48.460 kb on - strand, within GFF774at 48.545 kb on - strandat 48.545 kb on - strandat 48.581 kb on + strandat 48.581 kb on + strandat 48.581 kb on + strandat 48.582 kb on - strandat 48.582 kb on - strandat 48.582 kb on - strandat 48.582 kb on - strandat 48.582 kb on - strandat 48.582 kb on - strandat 48.582 kb on - strandat 48.582 kb on - strandat 48.656 kb on + strand, within GFF775at 48.657 kb on - strand, within GFF775at 48.657 kb on - strand, within GFF775at 48.657 kb on - strand, within GFF775at 48.657 kb on - strand, within GFF775at 48.657 kb on - strand, within GFF775at 48.788 kb on + strand, within GFF775

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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41,885 - GFF771 0.56 +0.6
41,887 + GFF771 0.56 -0.4
41,950 + GFF771 0.59 -0.6
42,200 - GFF771 0.72 -0.7
42,469 + GFF771 0.87 +0.2
42,470 - GFF771 0.87 -0.5
43,218 - -0.4
43,424 + GFF772 0.14 +0.8
43,460 + GFF772 0.15 -0.0
43,461 - GFF772 0.15 +1.8
43,577 + GFF772 0.17 -0.0
43,578 - GFF772 0.17 -0.4
43,881 - GFF772 0.23 +0.2
43,958 + GFF772 0.24 -0.1
43,958 + GFF772 0.24 -0.3
43,959 - GFF772 0.24 -0.5
43,959 - GFF772 0.24 +0.1
44,252 + GFF772 0.30 -0.8
44,252 + GFF772 0.30 +2.2
44,253 - GFF772 0.30 -0.2
44,253 - GFF772 0.30 -1.0
44,253 - GFF772 0.30 +0.8
44,258 + GFF772 0.30 -0.2
44,258 + GFF772 0.30 +0.3
44,258 + GFF772 0.30 -1.4
44,258 + GFF772 0.30 +1.2
44,258 + GFF772 0.30 -0.2
44,258 + GFF772 0.30 +0.1
44,259 - GFF772 0.30 -1.0
44,259 - GFF772 0.30 -1.6
44,259 - GFF772 0.30 +0.8
44,295 + GFF772 0.31 -0.1
44,295 + GFF772 0.31 +0.3
44,295 + GFF772 0.31 -1.3
44,405 + GFF772 0.33 +0.4
44,406 - GFF772 0.33 +0.2
44,987 + GFF772 0.44 +1.4
44,988 - GFF772 0.44 -1.4
45,075 - GFF772 0.46 -0.1
45,120 - GFF772 0.47 -0.4
45,308 + GFF772 0.50 -1.0
45,309 - GFF772 0.50 -2.0
45,464 + GFF772 0.53 +0.2
45,500 + GFF772 0.54 -0.4
45,500 + GFF772 0.54 +0.6
45,571 + GFF772 0.55 +0.2
45,834 - GFF772 0.60 +0.0
45,977 + GFF772 0.63 +1.8
45,978 - GFF772 0.63 -0.1
45,992 + GFF772 0.63 +0.5
45,993 - GFF772 0.64 +1.8
46,016 + GFF772 0.64 +0.1
46,017 - GFF772 0.64 +2.3
46,017 - GFF772 0.64 +0.8
46,082 + GFF772 0.65 +0.1
46,082 + GFF772 0.65 +0.4
46,082 + GFF772 0.65 -2.2
46,082 + GFF772 0.65 +0.3
46,442 + GFF772 0.72 -0.8
46,442 + GFF772 0.72 -0.0
46,442 + GFF772 0.72 -1.0
46,442 + GFF772 0.72 +0.3
46,443 - GFF772 0.72 -0.4
46,443 - GFF772 0.72 +0.1
46,443 - GFF772 0.72 -1.4
46,443 - GFF772 0.72 +1.8
46,443 - GFF772 0.72 -0.5
46,443 - GFF772 0.72 -0.4
46,976 + GFF772 0.83 +0.4
46,986 - GFF772 0.83 -1.0
46,986 - GFF772 0.83 -1.2
46,986 - GFF772 0.83 -0.1
47,066 + GFF772 0.84 +0.4
47,066 + GFF772 0.84 -0.5
47,067 - GFF772 0.84 +0.5
47,067 - GFF772 0.84 +1.6
47,067 - GFF772 0.84 +0.1
47,067 - GFF772 0.84 +0.2
47,129 + GFF772 0.85 +0.4
47,130 - GFF772 0.85 +0.9
47,270 + GFF772 0.88 +1.1
47,270 + GFF772 0.88 -1.4
47,270 + GFF772 0.88 -0.0
47,271 - GFF772 0.88 +0.6
47,271 - GFF772 0.88 -0.0
47,298 - GFF772 0.89 +0.1
47,361 - GFF772 0.90 +0.2
47,411 - +0.4
47,854 + -0.7
47,854 + +1.4
47,855 - +1.8
47,876 - -0.2
47,876 - -0.8
47,876 - -0.5
47,876 - +1.0
48,054 + GFF773 0.34 +0.8
48,055 - GFF773 0.34 +0.6
48,267 + -1.4
48,267 + +0.4
48,267 + +0.8
48,267 + +1.3
48,267 + -0.4
48,267 + +1.4
48,267 + -0.7
48,267 + -0.6
48,267 + +0.4
48,267 + -0.3
48,268 - -0.2
48,268 - +0.7
48,268 - -0.6
48,268 - +1.4
48,268 - -0.0
48,268 - -0.8
48,271 + +0.4
48,271 + +1.8
48,272 - -0.0
48,272 - +2.2
48,378 + GFF774 0.37 -0.1
48,379 - GFF774 0.37 -0.2
48,379 - GFF774 0.37 +0.0
48,379 - GFF774 0.37 -0.4
48,379 - GFF774 0.37 +0.1
48,379 - GFF774 0.37 -0.2
48,459 + GFF774 0.76 -0.2
48,459 + GFF774 0.76 -0.8
48,459 + GFF774 0.76 +0.8
48,460 - GFF774 0.76 -0.3
48,460 - GFF774 0.76 -0.3
48,460 - GFF774 0.76 +1.0
48,460 - GFF774 0.76 +0.3
48,460 - GFF774 0.76 +0.1
48,460 - GFF774 0.76 -0.5
48,460 - GFF774 0.76 +0.2
48,545 - -1.9
48,545 - +0.2
48,581 + -0.4
48,581 + +0.1
48,581 + +0.4
48,582 - +1.8
48,582 - -0.1
48,582 - +0.1
48,582 - +1.0
48,582 - +0.5
48,582 - -0.3
48,582 - +0.4
48,582 - -1.0
48,656 + GFF775 0.18 -0.0
48,657 - GFF775 0.18 +0.4
48,657 - GFF775 0.18 +0.8
48,657 - GFF775 0.18 -2.1
48,657 - GFF775 0.18 -0.2
48,657 - GFF775 0.18 -1.2
48,788 + GFF775 0.67 -0.3

Or see this region's nucleotide sequence