Strain Fitness in Variovorax sp. SCN45 around GFF740

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
1,788	+		GFF739	0.42	+2.4
1,788	+		GFF739	0.42	-0.6
1,788	+		GFF739	0.42	+0.8
1,825	+		GFF739	0.45	+0.1
1,825	+		GFF739	0.45	+0.1
1,825	+		GFF739	0.45	+0.6
1,825	+		GFF739	0.45	+0.4
1,825	+		GFF739	0.45	-0.7
1,826	-		GFF739	0.46	+0.4
1,826	-		GFF739	0.46	-0.4
1,875	+		GFF739	0.50	+0.4
1,875	+		GFF739	0.50	+0.2
1,875	+		GFF739	0.50	-0.8
1,875	+		GFF739	0.50	+0.6
1,875	+		GFF739	0.50	-0.0
1,875	+		GFF739	0.50	-0.4
1,875	+		GFF739	0.50	-1.2
1,875	+		GFF739	0.50	+0.5
1,875	+		GFF739	0.50	+0.8
1,875	+		GFF739	0.50	-0.4
1,875	+		GFF739	0.50	-0.2
1,875	+		GFF739	0.50	-0.4
1,875	+		GFF739	0.50	+1.5
1,875	+		GFF739	0.50	+0.0
1,875	+		GFF739	0.50	+0.0
1,875	+		GFF739	0.50	+0.2
1,875	+		GFF739	0.50	-0.8
1,875	+		GFF739	0.50	-0.2
1,876	-		GFF739	0.50	-0.8
1,876	-		GFF739	0.50	+0.3
1,876	-		GFF739	0.50	-0.2
1,876	-		GFF739	0.50	-0.5
1,876	-		GFF739	0.50	-0.7
1,876	-		GFF739	0.50	-0.3
1,876	-		GFF739	0.50	-1.4
1,876	-		GFF739	0.50	+0.2
1,876	-		GFF739	0.50	-1.0
1,876	-		GFF739	0.50	-0.6
1,876	-		GFF739	0.50	-0.3
1,876	-		GFF739	0.50	+0.8
1,876	-		GFF739	0.50	+0.3
1,876	-		GFF739	0.50	-0.2
1,876	-		GFF739	0.50	-0.3
1,876	-		GFF739	0.50	+1.2
1,876	-		GFF739	0.50	+0.1
1,905	+		GFF739	0.53	-0.2
1,905	+		GFF739	0.53	-0.2
1,905	+		GFF739	0.53	-0.8
1,906	-		GFF739	0.53	-1.2
1,906	-		GFF739	0.53	-1.0
1,906	-		GFF739	0.53	-0.0
1,906	-		GFF739	0.53	-0.5
1,906	-		GFF739	0.53	-0.5
1,906	-		GFF739	0.53	-1.0
1,932	+		GFF739	0.56	+1.1
1,932	+		GFF739	0.56	-0.2
1,933	-		GFF739	0.56	-0.4
1,933	-		GFF739	0.56	-0.8
1,933	-		GFF739	0.56	-0.4
2,013	+		GFF739	0.64	-0.3
2,013	+		GFF739	0.64	-1.9
2,013	+		GFF739	0.64	+1.2
2,013	+		GFF739	0.64	+0.8
2,013	+		GFF739	0.64	-0.1
2,013	+		GFF739	0.64	-0.9
2,013	+		GFF739	0.64	-1.7
2,013	+		GFF739	0.64	-0.6
2,014	-		GFF739	0.64	+1.5
2,014	-		GFF739	0.64	-0.4
2,014	-		GFF739	0.64	+1.2
2,014	-		GFF739	0.64	-0.6
2,014	-		GFF739	0.64	+0.1
2,023	-		GFF739	0.65	-0.4
2,028	+		GFF739	0.66	+0.3
2,028	+		GFF739	0.66	-1.3
2,028	+		GFF739	0.66	-1.6
2,028	+		GFF739	0.66	-0.3
2,029	-		GFF739	0.66	+0.3
2,029	-		GFF739	0.66	+0.5
2,029	-		GFF739	0.66	-0.1
2,079	+		GFF739	0.71	+0.2
2,079	+		GFF739	0.71	+1.2
2,079	+		GFF739	0.71	-0.1
2,080	-		GFF739	0.71	-1.6
2,080	-		GFF739	0.71	-0.4
2,203	+		GFF739	0.83	+0.2
2,203	+		GFF739	0.83	-0.1
2,203	+		GFF739	0.83	+1.4
2,203	+		GFF739	0.83	-0.1
2,203	+		GFF739	0.83	-0.1
2,204	-		GFF739	0.83	+0.5
2,204	-		GFF739	0.83	+0.2
2,204	-		GFF739	0.83	-0.2
2,204	-		GFF739	0.83	-1.3
2,204	-		GFF739	0.83	-0.2
2,204	-		GFF739	0.83	-0.2
2,204	-		GFF739	0.83	-1.9
2,204	-		GFF739	0.83	-0.7
2,479	+				-0.9
2,479	+				-0.7
2,479	+				-0.0
2,479	+				+0.8
2,480	-				-0.8
2,480	-				+0.2
2,480	-				+1.2
2,782	+				+0.3
2,782	+				-0.5
2,782	+				-1.0
2,782	+				+0.3
2,782	+				+0.3
2,782	+				+1.2
2,783	-				+0.2
2,783	-				+1.2
2,783	-				-2.0
2,783	-				+0.4
2,803	+				+1.3
2,803	+				+0.7
2,804	-				+0.4
3,002	-		GFF740	0.21	-0.6
3,002	-		GFF740	0.21	+0.9
3,004	+		GFF740	0.21	-1.4
3,004	+		GFF740	0.21	-0.1
3,004	+		GFF740	0.21	-0.6
3,004	+		GFF740	0.21	-0.5
3,004	+		GFF740	0.21	-0.5
3,004	+		GFF740	0.21	+0.5
3,004	+		GFF740	0.21	-0.7
3,004	+		GFF740	0.21	-0.2
3,004	+		GFF740	0.21	-0.5
3,004	+		GFF740	0.21	+0.8
3,004	+		GFF740	0.21	+1.8
3,005	-		GFF740	0.21	+0.8
3,005	-		GFF740	0.21	-0.1
3,005	-		GFF740	0.21	+0.1
3,005	-		GFF740	0.21	-0.1
3,005	-		GFF740	0.21	+0.1
3,005	-		GFF740	0.21	-0.9
3,005	-		GFF740	0.21	+0.3
3,316	+		GFF740	0.44	+3.8
3,316	+		GFF740	0.44	-0.1
3,316	+		GFF740	0.44	+0.6
3,316	+		GFF740	0.44	+0.1
3,317	-		GFF740	0.44	-0.3
3,317	-		GFF740	0.44	-0.2
3,317	-		GFF740	0.44	-0.7
3,317	-		GFF740	0.44	-0.6
3,317	-		GFF740	0.44	+0.9
3,317	-		GFF740	0.44	+0.0
3,429	+		GFF740	0.52	+0.5
3,429	+		GFF740	0.52	-0.4
3,429	+		GFF740	0.52	+0.4
3,430	-		GFF740	0.52	-1.3
3,430	-		GFF740	0.52	-0.2
3,640	+		GFF740	0.67	+0.9
3,641	-		GFF740	0.67	+0.3
3,641	-		GFF740	0.67	-1.3
3,700	+		GFF740	0.72	+1.8
3,701	-		GFF740	0.72	+0.0
3,785	-		GFF740	0.78	+1.2
3,889	+		GFF740	0.85	-0.2
3,889	+		GFF740	0.85	-1.0
3,889	+		GFF740	0.85	-0.9
3,890	-		GFF740	0.85	+2.0
3,890	-		GFF740	0.85	+0.2
3,890	-		GFF740	0.85	+1.0
3,890	-		GFF740	0.85	-1.6
3,961	+				-0.0
3,961	+				-0.2
3,961	+				+0.8
3,961	+				+0.2
3,961	+				+1.4
3,961	+				-0.5
3,961	+				-0.8
3,961	+				-0.3
3,961	+				-0.9
3,961	+				+1.4
3,962	-				+0.8
3,962	-				-0.0
4,033	+				-0.2
4,034	-				+1.0
4,034	-				-0.9
4,034	-				-0.2
4,090	+				+0.1
4,090	+				+0.1
4,091	-				+1.1
4,091	-				-1.1
4,091	-				+1.2
4,091	-				-1.6
4,091	-				-0.6
4,091	-				-2.0
4,235	+		GFF741	0.12	-0.2
4,235	+		GFF741	0.12	+1.2
4,235	+		GFF741	0.12	+0.0
4,236	-		GFF741	0.12	+1.0
4,344	+		GFF741	0.24	+0.0
4,344	+		GFF741	0.24	+0.8
4,345	-		GFF741	0.24	+0.8
4,345	-		GFF741	0.24	+0.8
4,345	-		GFF741	0.24	-0.7
4,345	-		GFF741	0.24	+0.5
4,345	-		GFF741	0.24	-0.3
4,345	-		GFF741	0.24	+1.4
4,345	-		GFF741	0.24	+0.2
4,378	+		GFF741	0.28	-0.2
4,378	+		GFF741	0.28	+0.3
4,379	-		GFF741	0.28	-0.1
4,935	+				-0.1
4,935	+				-0.4
4,935	+				+0.0
4,935	+				-1.4
4,935	+				-0.1
4,935	+				-0.3
4,936	-				+0.5
4,936	-				-0.2
4,936	-				+0.2
4,936	-				+0.9
4,936	-				+0.0
4,936	-				-0.6
4,936	-				-0.1
4,936	-				+0.3
4,936	-				+0.2
4,936	-				-0.8
4,936	-				+0.0
4,939	-				-0.6
4,939	-				+0.5