Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7285 and GFF7286 are separated by 131 nucleotides GFF7286 and GFF7287 overlap by 4 nucleotides
GFF7285 - Dipeptide ABC transporter, permease protein DppC (TC 3.A.1.5.2), at 2,966 to 3,871
GFF7285
GFF7286 - Dipeptide ABC transporter, ATP-binding protein DppD (TC 3.A.1.5.2), at 4,003 to 5,031
GFF7286
GFF7287 - Dipeptide ABC transporter, ATP-binding protein DppF (TC 3.A.1.5.2), at 5,028 to 6,062
GFF7287
Position (kb) 4
5
6 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 3.204 kb on - strand, within GFF7285 at 3.254 kb on + strand, within GFF7285 at 3.254 kb on + strand, within GFF7285 at 3.254 kb on + strand, within GFF7285 at 3.255 kb on - strand, within GFF7285 at 3.255 kb on - strand, within GFF7285 at 3.255 kb on - strand, within GFF7285 at 3.255 kb on - strand, within GFF7285 at 3.255 kb on - strand, within GFF7285 at 3.494 kb on + strand, within GFF7285 at 3.494 kb on + strand, within GFF7285 at 3.494 kb on + strand, within GFF7285 at 3.494 kb on + strand, within GFF7285 at 3.495 kb on - strand, within GFF7285 at 3.495 kb on - strand, within GFF7285 at 3.542 kb on + strand, within GFF7285 at 3.542 kb on + strand, within GFF7285 at 3.542 kb on + strand, within GFF7285 at 3.542 kb on + strand, within GFF7285 at 3.543 kb on - strand, within GFF7285 at 3.543 kb on - strand, within GFF7285 at 3.870 kb on - strand at 4.001 kb on - strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.685 kb on - strand, within GFF7286 at 4.685 kb on - strand, within GFF7286 at 4.747 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 5.082 kb on + strand at 5.082 kb on + strand at 5.082 kb on + strand at 5.082 kb on + strand at 5.083 kb on - strand at 5.083 kb on - strand at 5.282 kb on + strand, within GFF7287 at 5.283 kb on - strand, within GFF7287 at 5.478 kb on + strand, within GFF7287 at 5.661 kb on + strand, within GFF7287 at 5.724 kb on + strand, within GFF7287 at 5.724 kb on + strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.787 kb on + strand, within GFF7287 at 5.787 kb on + strand, within GFF7287 at 5.979 kb on + strand at 5.979 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 3,204 - GFF7285 0.26 -1.7 3,254 + GFF7285 0.32 +0.4 3,254 + GFF7285 0.32 +0.4 3,254 + GFF7285 0.32 +0.7 3,255 - GFF7285 0.32 -0.3 3,255 - GFF7285 0.32 -0.3 3,255 - GFF7285 0.32 +0.8 3,255 - GFF7285 0.32 -1.5 3,255 - GFF7285 0.32 +0.2 3,494 + GFF7285 0.58 -0.2 3,494 + GFF7285 0.58 -0.2 3,494 + GFF7285 0.58 -0.3 3,494 + GFF7285 0.58 -1.0 3,495 - GFF7285 0.58 -0.8 3,495 - GFF7285 0.58 -1.0 3,542 + GFF7285 0.64 -0.4 3,542 + GFF7285 0.64 +4.0 3,542 + GFF7285 0.64 -0.3 3,542 + GFF7285 0.64 -1.0 3,543 - GFF7285 0.64 -0.5 3,543 - GFF7285 0.64 +1.1 3,870 - -0.4 4,001 - +0.1 4,002 + -0.3 4,002 + +2.0 4,002 + -0.0 4,002 + -0.5 4,002 + +0.4 4,003 - -0.3 4,003 - +0.4 4,003 - -0.5 4,003 - -0.5 4,003 - -1.2 4,003 - +0.3 4,684 + GFF7286 0.66 +0.7 4,684 + GFF7286 0.66 -0.1 4,684 + GFF7286 0.66 -0.2 4,684 + GFF7286 0.66 +0.7 4,684 + GFF7286 0.66 +0.6 4,684 + GFF7286 0.66 -0.0 4,685 - GFF7286 0.66 -0.4 4,685 - GFF7286 0.66 -0.4 4,747 + GFF7286 0.72 +0.8 4,876 + GFF7286 0.85 +0.3 4,876 + GFF7286 0.85 -0.4 4,876 + GFF7286 0.85 +0.4 4,877 - GFF7286 0.85 -0.3 4,877 - GFF7286 0.85 -0.0 4,877 - GFF7286 0.85 +2.0 5,082 + +0.7 5,082 + +3.0 5,082 + +0.9 5,082 + +1.7 5,083 - -0.6 5,083 - +0.2 5,282 + GFF7287 0.25 +0.1 5,283 - GFF7287 0.25 +1.2 5,478 + GFF7287 0.43 +0.2 5,661 + GFF7287 0.61 +0.3 5,724 + GFF7287 0.67 -0.2 5,724 + GFF7287 0.67 -0.5 5,725 - GFF7287 0.67 -0.9 5,725 - GFF7287 0.67 -0.1 5,725 - GFF7287 0.67 -0.4 5,725 - GFF7287 0.67 -0.3 5,787 + GFF7287 0.73 -0.2 5,787 + GFF7287 0.73 -0.2 5,979 + +1.0 5,979 + -1.0
Or see this region's nucleotide sequence