Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7277 and GFF7278 overlap by 8 nucleotides GFF7278 and GFF7279 are separated by 290 nucleotides
GFF7277 - Mobile element protein, at 25,884 to 26,693
GFF7277
GFF7278 - Transposase, at 26,686 to 28,197
GFF7278
GFF7279 - no description, at 28,488 to 28,781
GFF7279
Position (kb) 26
27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 25.784 kb on + strand at 25.784 kb on + strand at 25.784 kb on + strand at 25.785 kb on - strand at 25.785 kb on - strand at 25.785 kb on - strand at 25.785 kb on - strand at 25.835 kb on + strand at 25.973 kb on + strand, within GFF7277 at 25.974 kb on - strand, within GFF7277 at 25.974 kb on - strand, within GFF7277 at 25.974 kb on - strand, within GFF7277 at 26.300 kb on - strand, within GFF7277 at 26.724 kb on - strand at 27.057 kb on - strand, within GFF7278 at 27.057 kb on - strand, within GFF7278 at 27.530 kb on + strand, within GFF7278 at 27.530 kb on + strand, within GFF7278 at 27.617 kb on + strand, within GFF7278 at 27.618 kb on - strand, within GFF7278 at 27.618 kb on - strand, within GFF7278 at 27.761 kb on + strand, within GFF7278 at 27.764 kb on + strand, within GFF7278 at 27.924 kb on - strand, within GFF7278 at 28.326 kb on - strand at 28.326 kb on - strand at 28.360 kb on + strand at 28.538 kb on - strand, within GFF7279 at 28.539 kb on + strand, within GFF7279 at 28.539 kb on + strand, within GFF7279 at 28.690 kb on - strand, within GFF7279 at 28.723 kb on + strand, within GFF7279 at 28.806 kb on - strand at 28.845 kb on - strand at 28.845 kb on - strand at 28.984 kb on + strand at 28.984 kb on + strand at 29.143 kb on + strand at 29.144 kb on - strand at 29.144 kb on - strand at 29.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 25,784 + -1.5 25,784 + -0.1 25,784 + -0.1 25,785 - +0.3 25,785 - -0.3 25,785 - -1.6 25,785 - -0.0 25,835 + -2.0 25,973 + GFF7277 0.11 +0.3 25,974 - GFF7277 0.11 -0.1 25,974 - GFF7277 0.11 -0.3 25,974 - GFF7277 0.11 -0.6 26,300 - GFF7277 0.51 +3.9 26,724 - -0.6 27,057 - GFF7278 0.25 -0.7 27,057 - GFF7278 0.25 -0.6 27,530 + GFF7278 0.56 -0.0 27,530 + GFF7278 0.56 -0.1 27,617 + GFF7278 0.62 +2.8 27,618 - GFF7278 0.62 -1.2 27,618 - GFF7278 0.62 -1.1 27,761 + GFF7278 0.71 -0.1 27,764 + GFF7278 0.71 +1.3 27,924 - GFF7278 0.82 +1.6 28,326 - -0.0 28,326 - -0.5 28,360 + +0.8 28,538 - GFF7279 0.17 +1.2 28,539 + GFF7279 0.17 +0.6 28,539 + GFF7279 0.17 +1.0 28,690 - GFF7279 0.69 -0.4 28,723 + GFF7279 0.80 -1.2 28,806 - -0.2 28,845 - -0.4 28,845 - +0.3 28,984 + +0.1 28,984 + -2.3 29,143 + +0.6 29,144 - -2.2 29,144 - -1.6 29,147 + +0.6
Or see this region's nucleotide sequence