Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7255 and GFF7256 are separated by 15 nucleotides GFF7256 and GFF7257 are separated by 34 nucleotides
GFF7255 - BUG/TctC family periplasmic protein, at 1,188 to 2,024
GFF7255
GFF7256 - Dehydratase, IlvD/Edd family, at 2,040 to 3,770
GFF7256
GFF7257 - KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor, at 3,805 to 4,782
GFF7257
Position (kb) 2
3
4 Strain fitness (log2 ratio) -1
0
1 at 1.362 kb on + strand, within GFF7255 at 1.515 kb on + strand, within GFF7255 at 1.515 kb on + strand, within GFF7255 at 2.237 kb on - strand, within GFF7256 at 2.797 kb on + strand, within GFF7256 at 2.986 kb on - strand, within GFF7256 at 3.157 kb on - strand, within GFF7256 at 3.347 kb on - strand, within GFF7256 at 3.477 kb on + strand, within GFF7256 at 3.477 kb on + strand, within GFF7256 at 3.514 kb on - strand, within GFF7256 at 3.913 kb on + strand, within GFF7257 at 3.913 kb on + strand, within GFF7257 at 3.929 kb on - strand, within GFF7257 at 3.929 kb on - strand, within GFF7257 at 3.929 kb on - strand, within GFF7257 at 4.013 kb on - strand, within GFF7257 at 4.311 kb on + strand, within GFF7257 at 4.595 kb on - strand, within GFF7257
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 1,362 + GFF7255 0.21 -1.0 1,515 + GFF7255 0.39 -0.0 1,515 + GFF7255 0.39 -0.7 2,237 - GFF7256 0.11 -0.3 2,797 + GFF7256 0.44 +0.8 2,986 - GFF7256 0.55 +0.6 3,157 - GFF7256 0.65 +0.0 3,347 - GFF7256 0.76 -0.4 3,477 + GFF7256 0.83 +1.0 3,477 + GFF7256 0.83 +0.3 3,514 - GFF7256 0.85 +0.7 3,913 + GFF7257 0.11 +0.3 3,913 + GFF7257 0.11 -0.4 3,929 - GFF7257 0.13 +0.0 3,929 - GFF7257 0.13 +0.4 3,929 - GFF7257 0.13 -1.0 4,013 - GFF7257 0.21 -0.0 4,311 + GFF7257 0.52 +1.2 4,595 - GFF7257 0.81 +0.7
Or see this region's nucleotide sequence