Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7236 and GFF7237 are separated by 80 nucleotides GFF7237 and GFF7238 are separated by 4 nucleotides GFF7238 and GFF7239 are separated by 126 nucleotides
GFF7236 - Universal stress protein UspA and related nucleotide-binding proteins, at 17,159 to 18,106
GFF7236
GFF7237 - hypothetical protein, at 18,187 to 19,731
GFF7237
GFF7238 - no description, at 19,736 to 20,242
GFF7238
GFF7239 - Repair of Iron Centers di-iron protein, at 20,369 to 20,953
GFF7239
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.583 kb on - strand, within GFF7236 at 18.014 kb on + strand at 18.066 kb on + strand at 18.067 kb on - strand at 18.180 kb on - strand at 18.415 kb on + strand, within GFF7237 at 18.415 kb on + strand, within GFF7237 at 19.057 kb on + strand, within GFF7237 at 19.057 kb on + strand, within GFF7237 at 19.058 kb on - strand, within GFF7237 at 19.129 kb on + strand, within GFF7237 at 19.339 kb on + strand, within GFF7237 at 19.339 kb on + strand, within GFF7237 at 19.340 kb on - strand, within GFF7237 at 19.941 kb on - strand, within GFF7238 at 20.082 kb on + strand, within GFF7238 at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.239 kb on - strand at 20.239 kb on - strand at 20.510 kb on + strand, within GFF7239 at 20.511 kb on - strand, within GFF7239
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,583 - GFF7236 0.45 +0.1 18,014 + -1.8 18,066 + -1.1 18,067 - -0.6 18,180 - -1.5 18,415 + GFF7237 0.15 -0.6 18,415 + GFF7237 0.15 -0.3 19,057 + GFF7237 0.56 +0.4 19,057 + GFF7237 0.56 +0.1 19,058 - GFF7237 0.56 -1.2 19,129 + GFF7237 0.61 -0.1 19,339 + GFF7237 0.75 -0.2 19,339 + GFF7237 0.75 -1.9 19,340 - GFF7237 0.75 -0.8 19,941 - GFF7238 0.40 -0.4 20,082 + GFF7238 0.68 +0.4 20,238 + -0.4 20,238 + -2.0 20,238 + +2.1 20,238 + -0.1 20,238 + -0.2 20,238 + +1.5 20,239 - -0.6 20,239 - -0.7 20,510 + GFF7239 0.24 -0.1 20,511 - GFF7239 0.24 -0.1
Or see this region's nucleotide sequence