Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF721 and GFF722 overlap by 4 nucleotides GFF722 and GFF723 are separated by 76 nucleotides GFF723 and GFF724 overlap by 4 nucleotides
GFF721 - O-acetyl-ADP-ribose deacetylase, at 778,768 to 779,274
GFF721
GFF722 - hypothetical protein, at 779,271 to 780,047
GFF722
GFF723 - RNA polymerase ECF-type sigma factor, at 780,124 to 780,633
GFF723
GFF724 - Fe2+-dicitrate sensor, membrane component, at 780,630 to 781,622
GFF724
Position (kb) 780
781 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.177 kb on + strand, within GFF721 at 779.178 kb on - strand, within GFF721 at 779.255 kb on - strand at 779.286 kb on + strand at 779.287 kb on - strand at 779.287 kb on - strand at 779.319 kb on + strand at 779.730 kb on + strand, within GFF722 at 779.731 kb on - strand, within GFF722 at 779.731 kb on - strand, within GFF722 at 779.731 kb on - strand, within GFF722 at 779.850 kb on + strand, within GFF722 at 779.850 kb on + strand, within GFF722 at 779.850 kb on + strand, within GFF722 at 779.850 kb on + strand, within GFF722 at 779.850 kb on + strand, within GFF722 at 779.851 kb on - strand, within GFF722 at 779.851 kb on - strand, within GFF722 at 779.925 kb on + strand, within GFF722 at 779.926 kb on - strand, within GFF722 at 779.926 kb on - strand, within GFF722 at 779.928 kb on + strand, within GFF722 at 779.928 kb on + strand, within GFF722 at 779.928 kb on + strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 780.169 kb on + strand at 780.169 kb on + strand at 780.169 kb on + strand at 780.169 kb on + strand at 780.170 kb on - strand at 780.170 kb on - strand at 780.170 kb on - strand at 780.284 kb on + strand, within GFF723 at 780.284 kb on + strand, within GFF723 at 780.285 kb on - strand, within GFF723 at 780.285 kb on - strand, within GFF723 at 780.285 kb on - strand, within GFF723 at 780.313 kb on + strand, within GFF723 at 780.313 kb on + strand, within GFF723 at 780.313 kb on + strand, within GFF723 at 780.538 kb on + strand, within GFF723 at 780.539 kb on - strand, within GFF723 at 780.539 kb on - strand, within GFF723 at 780.539 kb on - strand, within GFF723 at 780.589 kb on + strand at 780.589 kb on + strand at 780.590 kb on - strand at 780.590 kb on - strand at 780.590 kb on - strand at 780.590 kb on - strand at 780.927 kb on + strand, within GFF724 at 780.928 kb on - strand, within GFF724 at 781.410 kb on + strand, within GFF724 at 781.410 kb on + strand, within GFF724 at 781.410 kb on + strand, within GFF724 at 781.411 kb on - strand, within GFF724 at 781.411 kb on - strand, within GFF724 at 781.411 kb on - strand, within GFF724 at 781.411 kb on - strand, within GFF724 at 781.539 kb on + strand at 781.539 kb on + strand at 781.540 kb on - strand at 781.540 kb on - strand at 781.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 779,131 + GFF721 0.72 +3.4 779,131 + GFF721 0.72 +0.3 779,131 + GFF721 0.72 -0.3 779,131 + GFF721 0.72 +0.5 779,131 + GFF721 0.72 -1.4 779,131 + GFF721 0.72 -0.2 779,131 + GFF721 0.72 +0.1 779,131 + GFF721 0.72 -0.4 779,132 - GFF721 0.72 +0.8 779,132 - GFF721 0.72 -0.2 779,132 - GFF721 0.72 -0.1 779,132 - GFF721 0.72 -0.2 779,132 - GFF721 0.72 +0.2 779,132 - GFF721 0.72 -0.4 779,132 - GFF721 0.72 +0.3 779,132 - GFF721 0.72 -0.5 779,132 - GFF721 0.72 -0.2 779,132 - GFF721 0.72 +0.7 779,132 - GFF721 0.72 -1.0 779,132 - GFF721 0.72 +0.8 779,177 + GFF721 0.81 -0.4 779,178 - GFF721 0.81 +0.6 779,255 - +0.5 779,286 + +0.5 779,287 - +0.1 779,287 - -0.6 779,319 + -0.3 779,730 + GFF722 0.59 +0.2 779,731 - GFF722 0.59 -0.7 779,731 - GFF722 0.59 +0.2 779,731 - GFF722 0.59 -1.7 779,850 + GFF722 0.75 -0.2 779,850 + GFF722 0.75 -0.5 779,850 + GFF722 0.75 +0.4 779,850 + GFF722 0.75 -0.3 779,850 + GFF722 0.75 -0.8 779,851 - GFF722 0.75 +0.1 779,851 - GFF722 0.75 -1.6 779,925 + GFF722 0.84 -0.4 779,926 - GFF722 0.84 -0.2 779,926 - GFF722 0.84 +0.0 779,928 + GFF722 0.85 +0.4 779,928 + GFF722 0.85 +0.7 779,928 + GFF722 0.85 -1.0 779,929 - GFF722 0.85 -1.8 779,929 - GFF722 0.85 +0.0 779,929 - GFF722 0.85 +0.5 779,929 - GFF722 0.85 -0.2 779,929 - GFF722 0.85 -0.3 779,929 - GFF722 0.85 -0.4 779,929 - GFF722 0.85 -0.4 780,169 + +0.1 780,169 + -1.4 780,169 + -0.1 780,169 + +0.8 780,170 - -0.4 780,170 - +0.3 780,170 - -0.2 780,284 + GFF723 0.31 +0.5 780,284 + GFF723 0.31 -0.2 780,285 - GFF723 0.32 +0.2 780,285 - GFF723 0.32 +1.0 780,285 - GFF723 0.32 -0.9 780,313 + GFF723 0.37 -0.2 780,313 + GFF723 0.37 -0.1 780,313 + GFF723 0.37 +0.5 780,538 + GFF723 0.81 +0.6 780,539 - GFF723 0.81 +0.2 780,539 - GFF723 0.81 -0.1 780,539 - GFF723 0.81 +0.2 780,589 + +1.2 780,589 + +0.5 780,590 - +1.5 780,590 - +0.3 780,590 - +0.0 780,590 - +2.1 780,927 + GFF724 0.30 +0.8 780,928 - GFF724 0.30 -0.4 781,410 + GFF724 0.79 -0.6 781,410 + GFF724 0.79 +0.2 781,410 + GFF724 0.79 +0.8 781,411 - GFF724 0.79 +0.2 781,411 - GFF724 0.79 -0.3 781,411 - GFF724 0.79 +0.8 781,411 - GFF724 0.79 -0.8 781,539 + +0.1 781,539 + +0.3 781,540 - -1.2 781,540 - +0.3 781,597 - +0.2
Or see this region's nucleotide sequence