Strain Fitness in Variovorax sp. SCN45 around GFF7204

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7203 and GFF7204 are separated by 176 nucleotidesGFF7204 and GFF7205 are separated by 28 nucleotidesGFF7205 and GFF7206 are separated by 225 nucleotidesGFF7206 and GFF7207 are separated by 106 nucleotides GFF7203 - Two-component transcriptional response regulator, LuxR family, at 21,150 to 22,622 GFF7203 GFF7204 - no description, at 22,799 to 23,386 GFF7204 GFF7205 - no description, at 23,415 to 23,612 GFF7205 GFF7206 - no description, at 23,838 to 24,164 GFF7206 GFF7207 - no description, at 24,271 to 24,546 GFF7207 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1at 22.043 kb on - strand, within GFF7203at 22.093 kb on + strand, within GFF7203at 22.195 kb on + strand, within GFF7203at 22.195 kb on + strand, within GFF7203at 22.196 kb on - strand, within GFF7203at 22.853 kb on + strandat 22.854 kb on - strandat 22.854 kb on - strandat 22.856 kb on + strandat 22.857 kb on - strandat 22.857 kb on - strandat 23.309 kb on + strand, within GFF7204at 23.309 kb on + strand, within GFF7204at 23.309 kb on + strand, within GFF7204at 23.309 kb on + strand, within GFF7204at 23.310 kb on - strand, within GFF7204at 23.425 kb on + strandat 23.426 kb on - strandat 23.426 kb on - strandat 23.426 kb on - strandat 23.426 kb on - strandat 23.426 kb on - strandat 23.700 kb on + strandat 23.701 kb on - strandat 23.701 kb on - strandat 23.735 kb on + strandat 23.735 kb on + strandat 23.736 kb on - strandat 23.960 kb on + strand, within GFF7206at 23.968 kb on - strand, within GFF7206

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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22,043 - GFF7203 0.61 +0.5
22,093 + GFF7203 0.64 -0.5
22,195 + GFF7203 0.71 +1.7
22,195 + GFF7203 0.71 -0.8
22,196 - GFF7203 0.71 +0.5
22,853 + -0.2
22,854 - -1.6
22,854 - -0.2
22,856 + +0.4
22,857 - -0.4
22,857 - -0.7
23,309 + GFF7204 0.87 -1.6
23,309 + GFF7204 0.87 -0.9
23,309 + GFF7204 0.87 -0.6
23,309 + GFF7204 0.87 -1.2
23,310 - GFF7204 0.87 -2.3
23,425 + -0.0
23,426 - +0.6
23,426 - -0.1
23,426 - +1.1
23,426 - -0.6
23,426 - -0.2
23,700 + -0.4
23,701 - -0.3
23,701 - -1.5
23,735 + -0.1
23,735 + +1.5
23,736 - -0.8
23,960 + GFF7206 0.37 -0.5
23,968 - GFF7206 0.40 -2.3

Or see this region's nucleotide sequence