Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF715 and GFF716 overlap by 4 nucleotides GFF716 and GFF717 are separated by 28 nucleotides GFF717 and GFF718 are separated by 142 nucleotides
GFF715 - hypothetical protein, at 773,615 to 774,958
GFF715
GFF716 - no description, at 774,955 to 775,608
GFF716
GFF717 - Enoyl-CoA hydratase (EC 4.2.1.17), at 775,637 to 776,428
GFF717
GFF718 - AraC-type DNA-binding domain-containing proteins, at 776,571 to 777,587
GFF718
Position (kb) 774
775
776 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 774.207 kb on + strand, within GFF715 at 774.208 kb on - strand, within GFF715 at 774.350 kb on + strand, within GFF715 at 774.350 kb on + strand, within GFF715 at 774.351 kb on - strand, within GFF715 at 774.351 kb on - strand, within GFF715 at 774.439 kb on - strand, within GFF715 at 774.614 kb on + strand, within GFF715 at 774.615 kb on - strand, within GFF715 at 774.615 kb on - strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.665 kb on + strand, within GFF715 at 774.666 kb on - strand, within GFF715 at 774.666 kb on - strand, within GFF715 at 774.666 kb on - strand, within GFF715 at 774.666 kb on - strand, within GFF715 at 774.666 kb on - strand, within GFF715 at 774.890 kb on + strand at 774.890 kb on + strand at 774.890 kb on + strand at 774.890 kb on + strand at 774.891 kb on - strand at 774.891 kb on - strand at 774.891 kb on - strand at 774.891 kb on - strand at 774.954 kb on + strand at 774.955 kb on - strand at 775.039 kb on + strand, within GFF716 at 775.081 kb on + strand, within GFF716 at 775.082 kb on - strand, within GFF716 at 775.138 kb on + strand, within GFF716 at 775.138 kb on + strand, within GFF716 at 775.139 kb on - strand, within GFF716 at 775.139 kb on - strand, within GFF716 at 775.139 kb on - strand, within GFF716 at 775.348 kb on + strand, within GFF716 at 775.349 kb on - strand, within GFF716 at 775.349 kb on - strand, within GFF716 at 775.349 kb on - strand, within GFF716 at 775.349 kb on - strand, within GFF716 at 775.430 kb on - strand, within GFF716 at 775.439 kb on - strand, within GFF716 at 776.046 kb on + strand, within GFF717 at 776.047 kb on - strand, within GFF717 at 776.047 kb on - strand, within GFF717 at 776.446 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 774,207 + GFF715 0.44 +0.6 774,208 - GFF715 0.44 -0.6 774,350 + GFF715 0.55 +2.2 774,350 + GFF715 0.55 -0.1 774,351 - GFF715 0.55 +0.6 774,351 - GFF715 0.55 -0.2 774,439 - GFF715 0.61 -1.1 774,614 + GFF715 0.74 -0.7 774,615 - GFF715 0.74 -0.8 774,615 - GFF715 0.74 +0.1 774,665 + GFF715 0.78 +0.6 774,665 + GFF715 0.78 -1.4 774,665 + GFF715 0.78 -0.3 774,665 + GFF715 0.78 +0.7 774,665 + GFF715 0.78 +0.0 774,665 + GFF715 0.78 -1.0 774,665 + GFF715 0.78 +0.9 774,665 + GFF715 0.78 -0.4 774,666 - GFF715 0.78 -0.2 774,666 - GFF715 0.78 -1.0 774,666 - GFF715 0.78 -0.4 774,666 - GFF715 0.78 +0.6 774,666 - GFF715 0.78 +0.9 774,890 + +0.1 774,890 + +0.2 774,890 + +0.4 774,890 + +0.6 774,891 - +0.0 774,891 - -0.9 774,891 - +0.4 774,891 - +0.2 774,954 + -1.0 774,955 - +0.8 775,039 + GFF716 0.13 +0.1 775,081 + GFF716 0.19 +0.0 775,082 - GFF716 0.19 -0.0 775,138 + GFF716 0.28 -0.3 775,138 + GFF716 0.28 +1.6 775,139 - GFF716 0.28 -0.2 775,139 - GFF716 0.28 -0.7 775,139 - GFF716 0.28 -0.9 775,348 + GFF716 0.60 +1.8 775,349 - GFF716 0.60 -0.8 775,349 - GFF716 0.60 +0.1 775,349 - GFF716 0.60 +0.7 775,349 - GFF716 0.60 +0.4 775,430 - GFF716 0.73 +0.5 775,439 - GFF716 0.74 -3.0 776,046 + GFF717 0.52 -0.5 776,047 - GFF717 0.52 -0.2 776,047 - GFF717 0.52 +0.0 776,446 + -0.1
Or see this region's nucleotide sequence