Strain Fitness in Variovorax sp. SCN45 around GFF7141

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
8,037	+		GFF7139	0.61	-0.5
8,159	+		GFF7139	0.69	-1.2
8,159	+		GFF7139	0.69	-0.8
8,159	+		GFF7139	0.69	-1.1
8,159	+		GFF7139	0.69	-0.2
8,159	+		GFF7139	0.69	-0.9
8,159	+		GFF7139	0.69	+0.1
8,159	+		GFF7139	0.69	-0.4
8,159	+		GFF7139	0.69	-0.4
8,159	+		GFF7139	0.69	+0.2
8,159	+		GFF7139	0.69	-1.4
8,159	+		GFF7139	0.69	-0.5
8,159	+		GFF7139	0.69	+0.1
8,159	+		GFF7139	0.69	+0.4
8,159	+		GFF7139	0.69	-0.7
8,159	+		GFF7139	0.69	+1.1
8,159	+		GFF7139	0.69	+0.8
8,160	-		GFF7139	0.69	-0.9
8,160	-		GFF7139	0.69	-0.7
8,160	-		GFF7139	0.69	-0.2
8,160	-		GFF7139	0.69	-2.0
8,160	-		GFF7139	0.69	-0.2
8,160	-		GFF7139	0.69	-0.3
8,160	-		GFF7139	0.69	+0.0
8,160	-		GFF7139	0.69	+0.6
8,160	-		GFF7139	0.69	-0.8
8,160	-		GFF7139	0.69	-0.2
8,160	-		GFF7139	0.69	-0.5
8,160	-		GFF7139	0.69	-0.8
8,160	-		GFF7139	0.69	-0.4
8,160	-		GFF7139	0.69	-0.4
8,160	-		GFF7139	0.69	+0.0
8,160	-		GFF7139	0.69	-0.2
8,160	-		GFF7139	0.69	-0.7
8,160	-		GFF7139	0.69	-1.0
8,160	-		GFF7139	0.69	+0.0
8,160	-		GFF7139	0.69	+0.5
8,160	-		GFF7139	0.69	+1.8
8,160	-		GFF7139	0.69	-0.4
8,160	-		GFF7139	0.69	-0.9
8,179	+		GFF7139	0.70	-1.5
8,179	+		GFF7139	0.70	+0.5
8,179	+		GFF7139	0.70	+0.0
8,179	+		GFF7139	0.70	-0.4
8,179	+		GFF7139	0.70	+0.0
8,179	+		GFF7139	0.70	+1.0
8,179	+		GFF7139	0.70	-1.5
8,179	+		GFF7139	0.70	-0.4
8,180	-		GFF7139	0.70	+1.3
8,180	-		GFF7139	0.70	+0.5
8,180	-		GFF7139	0.70	-1.2
8,180	-		GFF7139	0.70	+0.6
8,180	-		GFF7139	0.70	-0.5
8,180	-		GFF7139	0.70	-0.1
8,180	-		GFF7139	0.70	+0.4
8,180	-		GFF7139	0.70	-1.0
8,180	-		GFF7139	0.70	-1.1
8,467	+				-0.4
8,467	+				+0.7
8,467	+				+0.0
8,467	+				-0.7
8,467	+				-0.0
8,467	+				-0.5
8,467	+				+0.9
8,467	+				-0.2
8,467	+				-0.3
8,467	+				-0.2
8,467	+				-0.4
8,467	+				+0.3
8,467	+				-1.3
8,467	+				-0.2
8,467	+				-0.4
8,467	+				-0.7
8,467	+				-1.5
8,467	+				-0.8
8,467	+				-0.8
8,467	+				+0.2
8,467	+				+0.4
8,467	+				+0.3
8,467	+				-1.0
8,467	+				-0.1
8,468	-				+0.3
8,468	-				+0.4
8,468	-				+1.2
8,468	-				-1.0
8,468	-				-0.3
8,468	-				+1.4
8,468	-				+0.8
8,468	-				-0.5
8,468	-				-0.8
8,468	-				-0.2
8,468	-				+0.2
8,468	-				-0.4
8,468	-				+0.7
8,468	-				-0.7
8,468	-				+1.4
8,468	-				-0.0
8,468	-				+1.4
8,468	-				+0.3
8,468	-				-0.7
8,468	-				+0.5
8,468	-				-0.5
8,468	-				+0.7
8,468	-				-1.1
8,468	-				-0.3
8,468	-				-1.7
8,468	-				+0.1
8,468	-				-0.8
8,468	-				+0.9
8,468	-				-2.1
8,468	-				-0.3
8,468	-				+1.1
8,468	-				-0.2
8,468	-				-0.7
8,601	+				-0.3
8,609	+				+0.5
8,609	+				+0.0
8,609	+				-0.7
8,610	-				-2.0
8,610	-				-1.2
8,610	-				-0.4
8,610	-				+1.2
8,610	-				-0.1
8,631	-				-0.0
8,649	+				+0.3
8,649	+				+0.5
8,649	+				-0.5
8,649	+				+0.4
8,649	+				-0.9
8,649	+				+0.7
8,649	+				-0.4
8,650	-				+0.8
8,650	-				-0.1
8,650	-				-0.3
8,650	-				+0.4
8,650	-				-1.2
8,650	-				+0.8
8,650	-				+1.4
8,650	-				+0.0
8,655	+				-0.1
8,656	-				-0.8
8,686	+		GFF7140	0.10	-0.1
8,735	+		GFF7140	0.39	-0.2
8,735	+		GFF7140	0.39	-0.2
8,735	+		GFF7140	0.39	-0.8
8,735	+		GFF7140	0.39	-0.1
8,735	+		GFF7140	0.39	-0.9
8,736	-		GFF7140	0.39	-0.3
8,736	-		GFF7140	0.39	-0.4
8,736	-		GFF7140	0.39	-1.1
8,736	-		GFF7140	0.39	-0.4
8,736	-		GFF7140	0.39	-0.3
8,981	+		GFF7141	0.15	+1.1
8,981	+		GFF7141	0.15	+0.0
8,981	+		GFF7141	0.15	-0.4
8,981	+		GFF7141	0.15	-1.1
8,981	+		GFF7141	0.15	-1.1
8,981	+		GFF7141	0.15	+0.5
8,982	-		GFF7141	0.15	-0.3
8,982	-		GFF7141	0.15	-0.4
8,982	-		GFF7141	0.15	-0.3
8,982	-		GFF7141	0.15	-0.6
8,982	-		GFF7141	0.15	-0.5
8,982	-		GFF7141	0.15	-0.4
9,035	+		GFF7141	0.32	-0.8
9,035	+		GFF7141	0.32	-1.9
9,035	+		GFF7141	0.32	-1.5
9,035	+		GFF7141	0.32	+1.0
9,035	+		GFF7141	0.32	-1.1
9,036	-		GFF7141	0.32	-0.5
9,036	-		GFF7141	0.32	+1.1
9,346	+				+0.5
9,346	+				+0.4
9,346	+				+0.3
9,346	+				-2.8
9,346	+				+0.2
9,346	+				+0.2
9,346	+				-0.5
9,346	+				+0.7
9,346	+				+0.1
9,346	+				+1.1
9,346	+				-1.4
9,347	-				-0.2
9,347	-				-0.3
9,347	-				-0.7
9,355	+				+1.0
9,355	+				+0.4
9,355	+				-0.1
9,355	+				+0.8
9,355	+				+0.3
9,355	+				+0.7
9,355	+				-0.4
9,356	-				+1.3
9,356	-				+0.8
9,356	-				-2.1
9,356	-				-0.5
9,356	-				-0.2
9,356	-				-0.2
9,430	+		GFF7142	0.18	+0.2
9,430	+		GFF7142	0.18	-0.1
9,430	+		GFF7142	0.18	-0.8
9,430	+		GFF7142	0.18	-0.2
9,430	+		GFF7142	0.18	-0.5
9,430	+		GFF7142	0.18	-0.5
9,430	+		GFF7142	0.18	-2.0
9,430	+		GFF7142	0.18	+0.2
9,430	+		GFF7142	0.18	+0.2
9,430	+		GFF7142	0.18	+0.4
9,430	+		GFF7142	0.18	+0.4
9,430	+		GFF7142	0.18	+0.9
9,430	+		GFF7142	0.18	+1.0
9,430	+		GFF7142	0.18	+0.3
9,431	-		GFF7142	0.18	-0.3
9,431	-		GFF7142	0.18	+0.0
9,431	-		GFF7142	0.18	+0.4
9,431	-		GFF7142	0.18	-0.9
9,431	-		GFF7142	0.18	-0.4
9,431	-		GFF7142	0.18	+0.2
9,431	-		GFF7142	0.18	-1.1
9,431	-		GFF7142	0.18	+2.1
9,431	-		GFF7142	0.18	-0.7
9,431	-		GFF7142	0.18	-0.3
9,431	-		GFF7142	0.18	-0.5
9,431	-		GFF7142	0.18	+0.1
9,431	-		GFF7142	0.18	-1.3
9,431	-		GFF7142	0.18	-0.5
9,431	-		GFF7142	0.18	+0.4
9,431	-		GFF7142	0.18	+1.7
9,431	-		GFF7142	0.18	+1.1
9,505	+		GFF7142	0.26	-0.0
9,505	+		GFF7142	0.26	-0.1
9,505	+		GFF7142	0.26	+0.3
9,505	+		GFF7142	0.26	-0.6
9,505	+		GFF7142	0.26	-0.6
9,505	+		GFF7142	0.26	+0.0
9,505	+		GFF7142	0.26	-0.8
9,505	+		GFF7142	0.26	-0.4
9,505	+		GFF7142	0.26	+2.1
9,505	+		GFF7142	0.26	-0.6
9,506	-		GFF7142	0.26	-2.1
9,506	-		GFF7142	0.26	-0.3
9,506	-		GFF7142	0.26	+1.1
9,646	+		GFF7142	0.42	+0.3
9,647	-		GFF7142	0.42	-0.2
9,647	-		GFF7142	0.42	+0.4
9,647	-		GFF7142	0.42	-0.2
9,647	-		GFF7142	0.42	-0.4
9,745	+		GFF7142	0.53	-0.4
9,745	+		GFF7142	0.53	-0.4
9,745	+		GFF7142	0.53	-0.3
9,745	+		GFF7142	0.53	-0.5
9,745	+		GFF7142	0.53	-0.2
9,746	-		GFF7142	0.53	+0.5
9,746	-		GFF7142	0.53	-0.2
9,746	-		GFF7142	0.53	+1.2
9,746	-		GFF7142	0.53	+0.1
9,967	+		GFF7142	0.78	+0.2
9,967	+		GFF7142	0.78	+0.2
10,191	+				+0.2
10,207	+				-1.3
10,226	-				-1.9
10,240	+				+0.2
10,241	-				+0.4
10,241	-				+0.4