Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7136 and GFF7137 are separated by 58 nucleotides GFF7137 and GFF7138 are separated by 84 nucleotides GFF7138 and GFF7139 overlap by 26 nucleotides
GFF7136 - hypothetical protein, at 5,086 to 5,334
GFF7136
GFF7137 - Translation initiation factor 1, at 5,393 to 5,665
GFF7137
GFF7138 - ATP-dependent 23S rRNA helicase DbpA, at 5,750 to 7,180
GFF7138
GFF7139 - MATE efflux family protein, at 7,155 to 8,609
GFF7139
Position (kb) 5
6
7
8 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.782 kb on - strand at 4.782 kb on - strand at 4.812 kb on - strand at 4.812 kb on - strand at 4.813 kb on + strand at 4.813 kb on + strand at 4.813 kb on + strand at 4.857 kb on + strand at 4.857 kb on + strand at 4.989 kb on + strand at 4.989 kb on + strand at 4.989 kb on + strand at 4.989 kb on + strand at 4.990 kb on - strand at 4.990 kb on - strand at 5.036 kb on + strand at 5.036 kb on + strand at 5.037 kb on - strand at 5.037 kb on - strand at 5.037 kb on - strand at 5.037 kb on - strand at 5.061 kb on + strand at 5.061 kb on + strand at 5.061 kb on + strand at 5.106 kb on + strand at 5.106 kb on + strand at 5.106 kb on + strand at 5.106 kb on + strand at 5.106 kb on + strand at 5.106 kb on + strand at 5.107 kb on - strand at 5.107 kb on - strand at 5.107 kb on - strand at 5.107 kb on - strand at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.122 kb on + strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.123 kb on - strand, within GFF7136 at 5.127 kb on - strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.266 kb on + strand, within GFF7136 at 5.267 kb on - strand, within GFF7136 at 5.267 kb on - strand, within GFF7136 at 5.267 kb on - strand, within GFF7136 at 5.267 kb on - strand, within GFF7136 at 5.267 kb on - strand, within GFF7136 at 5.267 kb on - strand, within GFF7136 at 5.267 kb on - strand, within GFF7136 at 5.267 kb on - strand, within GFF7136 at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.341 kb on + strand at 5.342 kb on - strand at 5.384 kb on + strand at 5.384 kb on + strand at 5.384 kb on + strand at 5.384 kb on + strand at 5.384 kb on + strand at 5.384 kb on + strand at 5.384 kb on + strand at 5.384 kb on + strand at 5.384 kb on + strand at 5.852 kb on + strand at 5.852 kb on + strand at 5.853 kb on - strand at 5.853 kb on - strand at 5.853 kb on - strand at 6.344 kb on + strand, within GFF7138 at 6.344 kb on + strand, within GFF7138 at 6.344 kb on + strand, within GFF7138 at 6.344 kb on + strand, within GFF7138 at 6.344 kb on + strand, within GFF7138 at 6.344 kb on + strand, within GFF7138 at 6.344 kb on + strand, within GFF7138 at 6.344 kb on + strand, within GFF7138 at 6.345 kb on - strand, within GFF7138 at 6.345 kb on - strand, within GFF7138 at 6.345 kb on - strand, within GFF7138 at 6.345 kb on - strand, within GFF7138 at 6.345 kb on - strand, within GFF7138 at 6.345 kb on - strand, within GFF7138 at 6.345 kb on - strand, within GFF7138 at 6.345 kb on - strand, within GFF7138 at 6.345 kb on - strand, within GFF7138 at 6.446 kb on + strand, within GFF7138 at 6.446 kb on + strand, within GFF7138 at 6.447 kb on - strand, within GFF7138 at 6.447 kb on - strand, within GFF7138 at 6.447 kb on - strand, within GFF7138 at 6.636 kb on + strand, within GFF7138 at 6.636 kb on + strand, within GFF7138 at 6.636 kb on + strand, within GFF7138 at 6.636 kb on + strand, within GFF7138 at 6.637 kb on - strand, within GFF7138 at 6.637 kb on - strand, within GFF7138 at 6.637 kb on - strand, within GFF7138 at 6.637 kb on - strand, within GFF7138 at 6.637 kb on - strand, within GFF7138 at 6.637 kb on - strand, within GFF7138 at 6.637 kb on - strand, within GFF7138 at 6.756 kb on + strand, within GFF7138 at 6.762 kb on + strand, within GFF7138 at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.079 kb on + strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.080 kb on - strand at 7.179 kb on - strand at 7.366 kb on + strand, within GFF7139 at 7.366 kb on + strand, within GFF7139 at 7.366 kb on + strand, within GFF7139 at 7.367 kb on - strand, within GFF7139 at 7.367 kb on - strand, within GFF7139 at 7.669 kb on + strand, within GFF7139 at 7.707 kb on + strand, within GFF7139 at 7.707 kb on + strand, within GFF7139 at 7.708 kb on - strand, within GFF7139 at 7.708 kb on - strand, within GFF7139 at 7.708 kb on - strand, within GFF7139 at 7.726 kb on + strand, within GFF7139 at 7.726 kb on + strand, within GFF7139 at 7.726 kb on + strand, within GFF7139 at 7.726 kb on + strand, within GFF7139 at 7.726 kb on + strand, within GFF7139 at 7.727 kb on - strand, within GFF7139 at 7.727 kb on - strand, within GFF7139 at 7.727 kb on - strand, within GFF7139 at 7.727 kb on - strand, within GFF7139 at 7.727 kb on - strand, within GFF7139 at 7.727 kb on - strand, within GFF7139 at 7.727 kb on - strand, within GFF7139 at 7.727 kb on - strand, within GFF7139 at 7.727 kb on - strand, within GFF7139 at 8.037 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.159 kb on + strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.160 kb on - strand, within GFF7139 at 8.179 kb on + strand, within GFF7139 at 8.179 kb on + strand, within GFF7139 at 8.179 kb on + strand, within GFF7139 at 8.179 kb on + strand, within GFF7139 at 8.179 kb on + strand, within GFF7139 at 8.179 kb on + strand, within GFF7139 at 8.179 kb on + strand, within GFF7139 at 8.179 kb on + strand, within GFF7139 at 8.180 kb on - strand, within GFF7139 at 8.180 kb on - strand, within GFF7139 at 8.180 kb on - strand, within GFF7139 at 8.180 kb on - strand, within GFF7139 at 8.180 kb on - strand, within GFF7139 at 8.180 kb on - strand, within GFF7139 at 8.180 kb on - strand, within GFF7139 at 8.180 kb on - strand, within GFF7139 at 8.180 kb on - strand, within GFF7139
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 4,782 - -0.9 4,782 - +0.2 4,812 - -0.3 4,812 - -0.5 4,813 + -1.3 4,813 + -0.4 4,813 + +0.4 4,857 + +0.7 4,857 + -0.9 4,989 + +0.3 4,989 + +0.3 4,989 + -1.3 4,989 + -0.8 4,990 - -0.4 4,990 - -1.2 5,036 + -0.1 5,036 + -0.3 5,037 - -0.2 5,037 - +0.4 5,037 - -0.7 5,037 - -0.3 5,061 + +0.7 5,061 + -0.1 5,061 + -0.1 5,106 + +0.7 5,106 + +0.5 5,106 + +0.0 5,106 + -0.2 5,106 + +1.1 5,106 + +0.1 5,107 - +0.5 5,107 - +0.8 5,107 - -1.7 5,107 - -0.6 5,122 + GFF7136 0.14 -0.9 5,122 + GFF7136 0.14 -0.9 5,122 + GFF7136 0.14 -3.2 5,122 + GFF7136 0.14 -1.1 5,122 + GFF7136 0.14 +0.2 5,122 + GFF7136 0.14 -0.5 5,122 + GFF7136 0.14 +0.5 5,122 + GFF7136 0.14 +1.1 5,122 + GFF7136 0.14 +0.9 5,122 + GFF7136 0.14 +0.0 5,122 + GFF7136 0.14 +1.7 5,122 + GFF7136 0.14 -0.7 5,122 + GFF7136 0.14 -0.3 5,122 + GFF7136 0.14 +0.3 5,122 + GFF7136 0.14 +0.0 5,122 + GFF7136 0.14 -0.3 5,122 + GFF7136 0.14 -0.3 5,122 + GFF7136 0.14 -0.6 5,122 + GFF7136 0.14 -0.7 5,122 + GFF7136 0.14 +0.1 5,122 + GFF7136 0.14 +0.5 5,122 + GFF7136 0.14 -0.7 5,122 + GFF7136 0.14 -0.2 5,123 - GFF7136 0.15 +0.0 5,123 - GFF7136 0.15 -0.4 5,123 - GFF7136 0.15 -0.3 5,123 - GFF7136 0.15 +1.6 5,123 - GFF7136 0.15 -0.3 5,123 - GFF7136 0.15 -0.1 5,123 - GFF7136 0.15 -0.2 5,123 - GFF7136 0.15 -0.1 5,123 - GFF7136 0.15 +0.8 5,123 - GFF7136 0.15 -0.9 5,123 - GFF7136 0.15 -0.2 5,123 - GFF7136 0.15 +0.5 5,123 - GFF7136 0.15 +0.4 5,123 - GFF7136 0.15 +0.4 5,123 - GFF7136 0.15 +0.2 5,123 - GFF7136 0.15 -0.1 5,123 - GFF7136 0.15 -0.9 5,127 - GFF7136 0.16 -0.6 5,266 + GFF7136 0.72 -0.4 5,266 + GFF7136 0.72 -1.7 5,266 + GFF7136 0.72 -0.2 5,266 + GFF7136 0.72 +0.6 5,266 + GFF7136 0.72 -0.7 5,266 + GFF7136 0.72 +0.4 5,266 + GFF7136 0.72 -1.0 5,266 + GFF7136 0.72 +2.7 5,266 + GFF7136 0.72 -1.4 5,266 + GFF7136 0.72 -0.9 5,266 + GFF7136 0.72 -0.1 5,266 + GFF7136 0.72 +0.4 5,266 + GFF7136 0.72 -0.2 5,267 - GFF7136 0.73 -0.5 5,267 - GFF7136 0.73 +1.3 5,267 - GFF7136 0.73 -1.8 5,267 - GFF7136 0.73 -0.9 5,267 - GFF7136 0.73 -1.4 5,267 - GFF7136 0.73 +0.3 5,267 - GFF7136 0.73 -0.5 5,267 - GFF7136 0.73 -1.0 5,341 + -1.5 5,341 + -1.0 5,341 + +0.4 5,341 + +0.3 5,341 + +0.1 5,341 + -0.4 5,341 + +2.5 5,341 + +1.1 5,341 + +0.5 5,341 + +0.5 5,341 + -0.5 5,341 + +0.0 5,341 + -0.3 5,341 + +0.0 5,342 - -0.5 5,384 + -0.9 5,384 + -1.2 5,384 + +0.0 5,384 + +0.0 5,384 + +2.8 5,384 + -0.3 5,384 + -0.7 5,384 + -0.5 5,384 + -0.1 5,852 + +0.9 5,852 + +0.2 5,853 - +0.4 5,853 - +0.1 5,853 - -0.3 6,344 + GFF7138 0.42 +0.6 6,344 + GFF7138 0.42 +0.1 6,344 + GFF7138 0.42 -1.1 6,344 + GFF7138 0.42 -0.7 6,344 + GFF7138 0.42 -0.2 6,344 + GFF7138 0.42 +0.8 6,344 + GFF7138 0.42 -0.7 6,344 + GFF7138 0.42 +1.0 6,345 - GFF7138 0.42 +0.9 6,345 - GFF7138 0.42 +0.0 6,345 - GFF7138 0.42 +0.4 6,345 - GFF7138 0.42 +0.1 6,345 - GFF7138 0.42 +1.1 6,345 - GFF7138 0.42 +0.1 6,345 - GFF7138 0.42 -0.1 6,345 - GFF7138 0.42 +0.2 6,345 - GFF7138 0.42 +0.1 6,446 + GFF7138 0.49 -0.6 6,446 + GFF7138 0.49 +0.7 6,447 - GFF7138 0.49 +1.3 6,447 - GFF7138 0.49 -1.5 6,447 - GFF7138 0.49 -0.0 6,636 + GFF7138 0.62 -1.0 6,636 + GFF7138 0.62 +1.7 6,636 + GFF7138 0.62 +0.2 6,636 + GFF7138 0.62 +0.8 6,637 - GFF7138 0.62 -0.2 6,637 - GFF7138 0.62 +0.7 6,637 - GFF7138 0.62 +0.6 6,637 - GFF7138 0.62 -0.3 6,637 - GFF7138 0.62 +0.9 6,637 - GFF7138 0.62 +0.9 6,637 - GFF7138 0.62 -0.2 6,756 + GFF7138 0.70 +0.3 6,762 + GFF7138 0.71 -0.2 7,079 + +0.1 7,079 + +0.3 7,079 + -0.3 7,079 + +0.0 7,079 + +0.1 7,079 + +1.4 7,079 + +1.3 7,079 + -1.1 7,079 + -0.2 7,079 + +0.1 7,079 + +1.1 7,079 + +0.4 7,079 + +0.3 7,079 + -0.2 7,079 + +0.4 7,079 + -1.1 7,079 + -0.6 7,079 + -1.3 7,079 + -0.6 7,079 + +0.1 7,079 + -0.2 7,079 + -0.9 7,079 + -0.1 7,079 + +0.7 7,079 + -0.5 7,079 + +0.0 7,079 + -0.1 7,079 + -0.9 7,080 - +0.2 7,080 - -0.9 7,080 - -0.2 7,080 - -0.9 7,080 - +0.5 7,080 - +0.3 7,080 - -0.7 7,080 - +0.5 7,080 - -0.9 7,080 - +0.7 7,080 - -0.1 7,080 - +0.1 7,080 - -0.7 7,080 - -1.3 7,179 - -0.7 7,366 + GFF7139 0.15 -0.8 7,366 + GFF7139 0.15 -0.8 7,366 + GFF7139 0.15 +0.7 7,367 - GFF7139 0.15 -0.2 7,367 - GFF7139 0.15 +0.1 7,669 + GFF7139 0.35 +0.0 7,707 + GFF7139 0.38 -0.4 7,707 + GFF7139 0.38 -0.8 7,708 - GFF7139 0.38 -0.2 7,708 - GFF7139 0.38 +1.0 7,708 - GFF7139 0.38 -0.6 7,726 + GFF7139 0.39 +0.3 7,726 + GFF7139 0.39 -0.5 7,726 + GFF7139 0.39 -0.4 7,726 + GFF7139 0.39 -0.1 7,726 + GFF7139 0.39 +0.4 7,727 - GFF7139 0.39 -0.4 7,727 - GFF7139 0.39 -0.2 7,727 - GFF7139 0.39 -0.9 7,727 - GFF7139 0.39 -0.5 7,727 - GFF7139 0.39 +1.2 7,727 - GFF7139 0.39 +0.0 7,727 - GFF7139 0.39 -0.1 7,727 - GFF7139 0.39 +0.1 7,727 - GFF7139 0.39 +0.1 8,037 + GFF7139 0.61 -0.5 8,159 + GFF7139 0.69 -1.2 8,159 + GFF7139 0.69 -0.8 8,159 + GFF7139 0.69 -1.1 8,159 + GFF7139 0.69 -0.2 8,159 + GFF7139 0.69 -0.9 8,159 + GFF7139 0.69 +0.1 8,159 + GFF7139 0.69 -0.4 8,159 + GFF7139 0.69 -0.4 8,159 + GFF7139 0.69 +0.2 8,159 + GFF7139 0.69 -1.4 8,159 + GFF7139 0.69 -0.5 8,159 + GFF7139 0.69 +0.1 8,159 + GFF7139 0.69 +0.4 8,159 + GFF7139 0.69 -0.7 8,159 + GFF7139 0.69 +1.1 8,159 + GFF7139 0.69 +0.8 8,160 - GFF7139 0.69 -0.9 8,160 - GFF7139 0.69 -0.7 8,160 - GFF7139 0.69 -0.2 8,160 - GFF7139 0.69 -2.0 8,160 - GFF7139 0.69 -0.2 8,160 - GFF7139 0.69 -0.3 8,160 - GFF7139 0.69 +0.0 8,160 - GFF7139 0.69 +0.6 8,160 - GFF7139 0.69 -0.8 8,160 - GFF7139 0.69 -0.2 8,160 - GFF7139 0.69 -0.5 8,160 - GFF7139 0.69 -0.8 8,160 - GFF7139 0.69 -0.4 8,160 - GFF7139 0.69 -0.4 8,160 - GFF7139 0.69 +0.0 8,160 - GFF7139 0.69 -0.2 8,160 - GFF7139 0.69 -0.7 8,160 - GFF7139 0.69 -1.0 8,160 - GFF7139 0.69 +0.0 8,160 - GFF7139 0.69 +0.5 8,160 - GFF7139 0.69 +1.8 8,160 - GFF7139 0.69 -0.4 8,160 - GFF7139 0.69 -0.9 8,179 + GFF7139 0.70 -1.5 8,179 + GFF7139 0.70 +0.5 8,179 + GFF7139 0.70 +0.0 8,179 + GFF7139 0.70 -0.4 8,179 + GFF7139 0.70 +0.0 8,179 + GFF7139 0.70 +1.0 8,179 + GFF7139 0.70 -1.5 8,179 + GFF7139 0.70 -0.4 8,180 - GFF7139 0.70 +1.3 8,180 - GFF7139 0.70 +0.5 8,180 - GFF7139 0.70 -1.2 8,180 - GFF7139 0.70 +0.6 8,180 - GFF7139 0.70 -0.5 8,180 - GFF7139 0.70 -0.1 8,180 - GFF7139 0.70 +0.4 8,180 - GFF7139 0.70 -1.0 8,180 - GFF7139 0.70 -1.1
Or see this region's nucleotide sequence