Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7024 and GFF7025 are separated by 11 nucleotides GFF7025 and GFF7026 are separated by 81 nucleotides GFF7026 and GFF7027 are separated by 71 nucleotides GFF7027 and GFF7028 overlap by 23 nucleotides GFF7028 and GFF7029 are separated by 567 nucleotides
GFF7024 - Histone acetyltransferase HPA2 and related acetyltransferases, at 41,837 to 42,307
GFF7024
GFF7025 - hypothetical protein, at 42,319 to 42,666
GFF7025
GFF7026 - hypothetical protein, at 42,748 to 43,233
GFF7026
GFF7027 - no description, at 43,305 to 43,676
GFF7027
GFF7028 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 43,654 to 44,097
GFF7028
GFF7029 - hypothetical protein, at 44,665 to 46,230
GFF7029
Position (kb) 43
44 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 42.320 kb on + strand at 42.320 kb on + strand at 42.321 kb on - strand at 42.321 kb on - strand at 42.321 kb on - strand at 42.321 kb on - strand at 42.324 kb on - strand at 42.324 kb on - strand at 42.425 kb on + strand, within GFF7025 at 42.426 kb on - strand, within GFF7025 at 42.459 kb on + strand, within GFF7025 at 42.461 kb on + strand, within GFF7025 at 42.461 kb on + strand, within GFF7025 at 42.461 kb on + strand, within GFF7025 at 42.462 kb on - strand, within GFF7025 at 42.462 kb on - strand, within GFF7025 at 42.462 kb on - strand, within GFF7025 at 42.462 kb on - strand, within GFF7025 at 42.462 kb on - strand, within GFF7025 at 42.471 kb on + strand, within GFF7025 at 42.513 kb on - strand, within GFF7025 at 42.551 kb on + strand, within GFF7025 at 42.551 kb on + strand, within GFF7025 at 42.551 kb on + strand, within GFF7025 at 42.552 kb on - strand, within GFF7025 at 42.552 kb on - strand, within GFF7025 at 42.552 kb on - strand, within GFF7025 at 42.552 kb on - strand, within GFF7025 at 42.623 kb on + strand, within GFF7025 at 42.624 kb on - strand, within GFF7025 at 42.702 kb on + strand at 42.703 kb on - strand at 42.703 kb on - strand at 43.265 kb on + strand at 43.266 kb on - strand at 43.275 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.279 kb on - strand at 43.279 kb on - strand at 43.279 kb on - strand at 43.413 kb on + strand, within GFF7027 at 43.413 kb on + strand, within GFF7027 at 43.413 kb on + strand, within GFF7027 at 43.414 kb on - strand, within GFF7027 at 43.414 kb on - strand, within GFF7027 at 43.656 kb on - strand at 43.656 kb on - strand at 43.656 kb on - strand at 43.656 kb on - strand at 43.736 kb on + strand, within GFF7028 at 43.736 kb on + strand, within GFF7028 at 43.736 kb on + strand, within GFF7028 at 43.737 kb on - strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.812 kb on - strand, within GFF7028 at 43.812 kb on - strand, within GFF7028 at 43.812 kb on - strand, within GFF7028 at 43.812 kb on - strand, within GFF7028 at 43.812 kb on - strand, within GFF7028 at 44.039 kb on + strand, within GFF7028 at 44.039 kb on + strand, within GFF7028 at 44.039 kb on + strand, within GFF7028 at 44.040 kb on - strand, within GFF7028 at 44.040 kb on - strand, within GFF7028 at 44.040 kb on - strand, within GFF7028 at 44.040 kb on - strand, within GFF7028 at 44.040 kb on - strand, within GFF7028 at 44.093 kb on + strand at 44.093 kb on + strand at 44.093 kb on + strand at 44.093 kb on + strand at 44.093 kb on + strand at 44.093 kb on + strand at 44.093 kb on + strand at 44.094 kb on - strand at 44.094 kb on - strand at 44.094 kb on - strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.111 kb on + strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.350 kb on + strand at 44.350 kb on + strand at 44.351 kb on - strand at 44.351 kb on - strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.359 kb on - strand at 44.359 kb on - strand at 44.359 kb on - strand at 44.359 kb on - strand at 44.359 kb on - strand at 44.422 kb on + strand at 44.423 kb on - strand at 44.423 kb on - strand at 44.423 kb on - strand at 44.423 kb on - strand at 44.423 kb on - strand at 44.423 kb on - strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.463 kb on - strand at 44.463 kb on - strand at 44.475 kb on + strand at 44.475 kb on + strand at 44.475 kb on + strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.545 kb on + strand at 44.545 kb on + strand at 44.545 kb on + strand at 44.546 kb on - strand at 44.546 kb on - strand at 44.546 kb on - strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.576 kb on + strand at 44.577 kb on - strand at 44.586 kb on + strand at 44.587 kb on - strand at 44.614 kb on + strand at 44.614 kb on + strand at 44.614 kb on + strand at 44.614 kb on + strand at 44.615 kb on - strand at 44.615 kb on - strand at 44.615 kb on - strand at 44.615 kb on - strand at 44.615 kb on - strand at 44.642 kb on + strand at 44.642 kb on + strand at 44.642 kb on + strand at 44.642 kb on + strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 42,320 + +0.2 42,320 + +0.6 42,321 - +0.2 42,321 - -0.6 42,321 - -0.4 42,321 - -0.2 42,324 - +0.5 42,324 - +1.3 42,425 + GFF7025 0.30 -0.3 42,426 - GFF7025 0.31 -0.4 42,459 + GFF7025 0.40 -0.2 42,461 + GFF7025 0.41 +0.2 42,461 + GFF7025 0.41 +0.7 42,461 + GFF7025 0.41 -0.1 42,462 - GFF7025 0.41 +0.1 42,462 - GFF7025 0.41 -0.5 42,462 - GFF7025 0.41 -1.0 42,462 - GFF7025 0.41 -0.7 42,462 - GFF7025 0.41 -1.0 42,471 + GFF7025 0.44 +0.1 42,513 - GFF7025 0.56 -0.0 42,551 + GFF7025 0.67 +0.4 42,551 + GFF7025 0.67 -0.1 42,551 + GFF7025 0.67 -1.0 42,552 - GFF7025 0.67 -0.2 42,552 - GFF7025 0.67 +0.2 42,552 - GFF7025 0.67 -0.3 42,552 - GFF7025 0.67 -0.1 42,623 + GFF7025 0.87 -0.2 42,624 - GFF7025 0.88 -0.5 42,702 + -0.1 42,703 - +0.4 42,703 - -0.3 43,265 + -0.7 43,266 - -0.8 43,275 + -0.0 43,278 + +0.8 43,278 + +0.3 43,278 + -1.0 43,278 + -0.2 43,278 + -0.5 43,279 - +0.3 43,279 - +0.4 43,279 - -0.3 43,413 + GFF7027 0.29 -1.9 43,413 + GFF7027 0.29 -0.3 43,413 + GFF7027 0.29 -1.1 43,414 - GFF7027 0.29 -0.2 43,414 - GFF7027 0.29 -0.7 43,656 - -2.5 43,656 - +0.7 43,656 - -0.5 43,656 - -1.0 43,736 + GFF7028 0.18 +0.2 43,736 + GFF7028 0.18 -0.2 43,736 + GFF7028 0.18 -0.3 43,737 - GFF7028 0.19 +0.4 43,811 + GFF7028 0.35 +0.6 43,811 + GFF7028 0.35 +0.0 43,811 + GFF7028 0.35 -0.2 43,811 + GFF7028 0.35 +0.5 43,811 + GFF7028 0.35 -0.2 43,811 + GFF7028 0.35 -0.5 43,812 - GFF7028 0.36 -0.5 43,812 - GFF7028 0.36 -0.2 43,812 - GFF7028 0.36 -0.3 43,812 - GFF7028 0.36 +1.0 43,812 - GFF7028 0.36 +0.2 44,039 + GFF7028 0.87 +0.8 44,039 + GFF7028 0.87 -1.4 44,039 + GFF7028 0.87 +0.1 44,040 - GFF7028 0.87 +1.6 44,040 - GFF7028 0.87 +0.1 44,040 - GFF7028 0.87 +0.1 44,040 - GFF7028 0.87 +0.0 44,040 - GFF7028 0.87 +0.6 44,093 + +1.0 44,093 + -0.5 44,093 + +0.7 44,093 + +3.2 44,093 + +0.2 44,093 + +0.0 44,093 + -0.5 44,094 - +0.1 44,094 - +0.3 44,094 - -0.2 44,110 + +0.6 44,110 + -0.3 44,110 + +1.2 44,110 + +0.2 44,110 + +0.1 44,110 + +0.5 44,110 + +0.0 44,110 + -1.2 44,110 + +0.2 44,110 + +1.2 44,110 + +0.6 44,110 + -1.0 44,111 + +0.7 44,111 - -0.5 44,111 - -0.1 44,111 - -0.2 44,111 - +0.2 44,111 - -0.3 44,111 - +0.3 44,111 - +0.9 44,111 - -0.0 44,111 - -0.2 44,111 - -1.2 44,111 - -0.5 44,350 + -0.8 44,350 + -1.5 44,351 - -1.7 44,351 - -0.4 44,358 + -0.5 44,358 + +0.5 44,358 + +0.3 44,358 + +0.3 44,358 + -0.8 44,358 + +0.0 44,358 + +0.4 44,358 + -0.4 44,359 - -0.8 44,359 - -0.7 44,359 - -1.1 44,359 - +0.7 44,359 - +0.7 44,422 + +1.0 44,423 - -0.4 44,423 - -2.0 44,423 - -0.3 44,423 - +0.1 44,423 - -0.2 44,423 - -0.0 44,455 + -0.7 44,455 + -0.6 44,455 + -0.3 44,455 + -0.4 44,455 + -0.8 44,455 + +1.0 44,455 + -0.3 44,455 + -0.7 44,456 - -0.8 44,456 - -0.5 44,456 - +1.0 44,456 - -0.8 44,456 - +1.2 44,456 - +0.4 44,456 - -1.0 44,456 - -0.2 44,456 - -0.3 44,456 - -0.8 44,456 - -0.4 44,456 - -0.2 44,456 - +0.1 44,456 - -0.5 44,463 - +0.1 44,463 - +0.2 44,475 + -1.0 44,475 + -0.3 44,475 + -1.2 44,476 - -0.7 44,476 - -1.0 44,476 - -0.6 44,476 - -0.5 44,476 - +0.4 44,476 - -1.0 44,476 - -0.8 44,545 + -1.0 44,545 + -0.0 44,545 + +0.8 44,546 - -0.4 44,546 - -0.7 44,546 - -0.4 44,549 + -0.3 44,549 + -1.0 44,549 + +0.6 44,549 + -0.7 44,549 + -0.7 44,549 + -0.4 44,549 + -0.1 44,549 + -1.0 44,549 + -0.2 44,549 + -1.4 44,549 + -1.0 44,549 + -0.1 44,549 + -0.5 44,550 - -0.3 44,550 - -0.4 44,550 - -0.3 44,550 - -0.6 44,550 - -0.8 44,550 - -1.3 44,550 - -0.4 44,550 - +0.0 44,550 - +0.3 44,550 - +0.0 44,550 - +0.1 44,550 - +0.5 44,550 - +1.0 44,550 - +1.0 44,550 - -0.4 44,550 - +0.1 44,550 - -0.7 44,550 - +0.4 44,550 - -0.9 44,550 - -0.3 44,550 - +0.0 44,550 - +0.0 44,550 - -1.4 44,576 + -0.4 44,577 - -0.4 44,586 + +1.1 44,587 - -0.3 44,614 + -0.2 44,614 + +0.0 44,614 + +0.9 44,614 + +2.2 44,615 - -0.5 44,615 - +0.5 44,615 - -0.4 44,615 - +0.8 44,615 - -0.1 44,642 + +0.2 44,642 + -0.7 44,642 + -0.9 44,642 + +0.0 44,643 - -0.4 44,643 - -0.1 44,643 - -1.4 44,643 - -0.5 44,643 - +0.6 44,643 - -0.7 44,643 - -0.3 44,643 - +0.3
Or see this region's nucleotide sequence