Strain Fitness in Variovorax sp. SCN45 around GFF6976

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6975 and GFF6976 are separated by 755 nucleotidesGFF6976 and GFF6977 are separated by 13 nucleotidesGFF6977 and GFF6978 are separated by 11 nucleotides GFF6975 - no description, at 47,719 to 48,168 GFF6975 GFF6976 - Nodulin-related protein CC_0717, at 48,924 to 49,631 GFF6976 GFF6977 - Cytochrome b561, at 49,645 to 50,202 GFF6977 GFF6978 - no description, at 50,214 to 50,915 GFF6978 Position (kb) 48 49 50Strain fitness (log2 ratio) -1 0 1at 47.939 kb on - strand, within GFF6975at 48.283 kb on - strandat 48.510 kb on - strandat 48.510 kb on - strandat 48.617 kb on + strandat 48.617 kb on + strandat 48.618 kb on - strandat 48.767 kb on + strandat 48.768 kb on - strandat 49.080 kb on + strand, within GFF6976at 49.080 kb on + strand, within GFF6976at 49.080 kb on + strand, within GFF6976at 49.081 kb on - strand, within GFF6976at 49.081 kb on - strand, within GFF6976at 49.081 kb on - strand, within GFF6976at 49.288 kb on + strand, within GFF6976at 49.288 kb on + strand, within GFF6976at 49.289 kb on - strand, within GFF6976at 49.310 kb on - strand, within GFF6976at 49.700 kb on + strandat 49.700 kb on + strandat 49.746 kb on - strand, within GFF6977at 50.109 kb on + strand, within GFF6977at 50.109 kb on + strand, within GFF6977at 50.117 kb on + strand, within GFF6977at 50.118 kb on - strand, within GFF6977at 50.118 kb on - strand, within GFF6977at 50.428 kb on + strand, within GFF6978

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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47,939 - GFF6975 0.49 +1.3
48,283 - -0.3
48,510 - +1.1
48,510 - -1.6
48,617 + +1.1
48,617 + +0.1
48,618 - -0.1
48,767 + -0.8
48,768 - +0.7
49,080 + GFF6976 0.22 -1.3
49,080 + GFF6976 0.22 -0.2
49,080 + GFF6976 0.22 -1.5
49,081 - GFF6976 0.22 -0.6
49,081 - GFF6976 0.22 -0.4
49,081 - GFF6976 0.22 -0.8
49,288 + GFF6976 0.51 -0.1
49,288 + GFF6976 0.51 -1.1
49,289 - GFF6976 0.52 -1.2
49,310 - GFF6976 0.55 -0.7
49,700 + +1.7
49,700 + -0.6
49,746 - GFF6977 0.18 -0.7
50,109 + GFF6977 0.83 -0.4
50,109 + GFF6977 0.83 -0.3
50,117 + GFF6977 0.85 -0.2
50,118 - GFF6977 0.85 -0.9
50,118 - GFF6977 0.85 -0.1
50,428 + GFF6978 0.30 +0.5

Or see this region's nucleotide sequence