Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6971 and GFF6972 are separated by 251 nucleotides GFF6972 and GFF6973 are separated by 139 nucleotides GFF6973 and GFF6974 are separated by 142 nucleotides GFF6974 and GFF6975 are separated by 9 nucleotides
GFF6971 - no description, at 46,329 to 46,454
GFF6971
GFF6972 - no description, at 46,706 to 46,822
GFF6972
GFF6973 - Mobile element protein, at 46,962 to 47,285
GFF6973
GFF6974 - no description, at 47,428 to 47,709
GFF6974
GFF6975 - no description, at 47,719 to 48,168
GFF6975
Position (kb) 46
47
48 Strain fitness (log2 ratio) -2
-1
0
1 at 45.974 kb on + strand at 45.975 kb on - strand at 46.110 kb on + strand at 46.198 kb on + strand at 46.198 kb on + strand at 46.198 kb on + strand at 46.198 kb on + strand at 46.199 kb on - strand at 46.281 kb on - strand at 46.300 kb on - strand at 46.432 kb on + strand, within GFF6971 at 46.432 kb on + strand, within GFF6971 at 46.433 kb on - strand, within GFF6971 at 46.433 kb on - strand, within GFF6971 at 46.556 kb on + strand at 46.556 kb on + strand at 46.568 kb on - strand at 46.568 kb on - strand at 46.570 kb on + strand at 46.570 kb on + strand at 46.570 kb on + strand at 46.571 kb on - strand at 46.571 kb on - strand at 46.571 kb on - strand at 46.571 kb on - strand at 46.571 kb on - strand at 46.571 kb on - strand at 46.593 kb on + strand at 46.594 kb on - strand at 46.630 kb on - strand at 46.630 kb on - strand at 46.734 kb on - strand, within GFF6972 at 46.749 kb on + strand, within GFF6972 at 46.897 kb on + strand at 46.897 kb on + strand at 46.898 kb on - strand at 46.932 kb on + strand at 46.933 kb on - strand at 46.933 kb on - strand at 46.950 kb on - strand at 46.950 kb on - strand at 46.950 kb on - strand at 46.950 kb on - strand at 46.963 kb on + strand at 46.963 kb on + strand at 46.963 kb on + strand at 46.963 kb on + strand at 46.963 kb on + strand at 46.963 kb on + strand at 46.964 kb on - strand at 46.964 kb on - strand at 46.964 kb on - strand at 46.989 kb on + strand at 47.074 kb on + strand, within GFF6973 at 47.075 kb on + strand, within GFF6973 at 47.075 kb on + strand, within GFF6973 at 47.075 kb on + strand, within GFF6973 at 47.076 kb on - strand, within GFF6973 at 47.076 kb on - strand, within GFF6973 at 47.076 kb on - strand, within GFF6973 at 47.080 kb on + strand, within GFF6973 at 47.080 kb on + strand, within GFF6973 at 47.173 kb on - strand, within GFF6973 at 47.238 kb on + strand, within GFF6973 at 47.238 kb on + strand, within GFF6973 at 47.238 kb on + strand, within GFF6973 at 47.291 kb on - strand at 47.291 kb on - strand at 47.291 kb on - strand at 47.358 kb on + strand at 47.358 kb on + strand at 47.358 kb on + strand at 47.358 kb on + strand at 47.359 kb on - strand at 47.359 kb on - strand at 47.359 kb on - strand at 47.359 kb on - strand at 47.630 kb on + strand, within GFF6974 at 47.631 kb on - strand, within GFF6974 at 47.939 kb on - strand, within GFF6975 at 48.283 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 45,974 + -1.6 45,975 - -0.1 46,110 + +0.3 46,198 + +0.1 46,198 + -1.1 46,198 + +0.0 46,198 + +0.9 46,199 - -0.1 46,281 - -1.8 46,300 - -0.0 46,432 + GFF6971 0.82 +0.7 46,432 + GFF6971 0.82 +0.3 46,433 - GFF6971 0.83 +0.3 46,433 - GFF6971 0.83 +0.4 46,556 + +0.3 46,556 + -0.2 46,568 - -1.0 46,568 - -0.3 46,570 + +0.5 46,570 + -0.1 46,570 + +0.1 46,571 - -0.3 46,571 - -1.3 46,571 - -0.4 46,571 - -0.5 46,571 - +0.1 46,571 - -0.5 46,593 + -0.1 46,594 - -0.6 46,630 - -0.9 46,630 - +0.1 46,734 - GFF6972 0.24 -0.6 46,749 + GFF6972 0.37 +0.5 46,897 + -0.6 46,897 + -0.0 46,898 - +0.7 46,932 + -0.0 46,933 - -1.0 46,933 - -0.2 46,950 - -0.2 46,950 - -0.4 46,950 - +0.7 46,950 - +0.7 46,963 + +0.1 46,963 + -0.4 46,963 + -0.1 46,963 + -0.4 46,963 + -0.8 46,963 + -0.4 46,964 - +0.3 46,964 - +1.2 46,964 - -2.0 46,989 + -0.6 47,074 + GFF6973 0.35 -0.5 47,075 + GFF6973 0.35 -0.0 47,075 + GFF6973 0.35 -1.2 47,075 + GFF6973 0.35 -1.0 47,076 - GFF6973 0.35 -0.6 47,076 - GFF6973 0.35 +0.1 47,076 - GFF6973 0.35 +0.9 47,080 + GFF6973 0.36 +0.1 47,080 + GFF6973 0.36 -1.0 47,173 - GFF6973 0.65 -1.5 47,238 + GFF6973 0.85 -0.1 47,238 + GFF6973 0.85 +0.5 47,238 + GFF6973 0.85 -0.1 47,291 - -1.0 47,291 - -0.4 47,291 - -0.7 47,358 + -0.1 47,358 + +1.5 47,358 + -0.8 47,358 + -1.6 47,359 - +0.1 47,359 - -0.5 47,359 - -0.5 47,359 - -0.4 47,630 + GFF6974 0.72 -0.7 47,631 - GFF6974 0.72 -0.1 47,939 - GFF6975 0.49 +1.3 48,283 - -0.3
Or see this region's nucleotide sequence