Strain Fitness in Variovorax sp. SCN45 around GFF6910

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6909 and GFF6910 are separated by 52 nucleotidesGFF6910 and GFF6911 are separated by 148 nucleotides GFF6909 - Amidohydrolase, at 43,569 to 44,996 GFF6909 GFF6910 - Xanthine permease, at 45,049 to 46,389 GFF6910 GFF6911 - Transcriptional regulator, LacI family, at 46,538 to 47,578 GFF6911 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2 3at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.143 kb on + strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.144 kb on - strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.662 kb on + strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.663 kb on - strand, within GFF6909at 44.734 kb on + strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 44.735 kb on - strand, within GFF6909at 45.194 kb on + strand, within GFF6910at 45.195 kb on - strand, within GFF6910at 45.195 kb on - strand, within GFF6910at 45.434 kb on + strand, within GFF6910at 45.435 kb on - strand, within GFF6910at 45.435 kb on - strand, within GFF6910at 45.435 kb on - strand, within GFF6910at 45.435 kb on - strand, within GFF6910at 45.435 kb on - strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.935 kb on + strand, within GFF6910at 45.936 kb on - strand, within GFF6910at 45.936 kb on - strand, within GFF6910at 45.999 kb on - strand, within GFF6910at 45.999 kb on - strand, within GFF6910at 46.037 kb on + strand, within GFF6910at 46.037 kb on + strand, within GFF6910at 46.037 kb on + strand, within GFF6910at 46.037 kb on + strand, within GFF6910at 46.037 kb on + strand, within GFF6910at 46.038 kb on - strand, within GFF6910at 46.351 kb on + strandat 46.351 kb on + strandat 46.351 kb on + strandat 46.351 kb on + strandat 46.351 kb on + strandat 46.352 kb on - strandat 46.352 kb on - strandat 46.352 kb on - strandat 46.352 kb on - strandat 46.352 kb on - strandat 46.352 kb on - strandat 46.353 kb on - strandat 46.468 kb on + strandat 46.468 kb on + strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.469 kb on - strandat 46.496 kb on + strandat 46.691 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.151 kb on - strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.172 kb on - strand, within GFF6911

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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44,143 + GFF6909 0.40 +0.5
44,143 + GFF6909 0.40 -0.8
44,143 + GFF6909 0.40 -0.9
44,143 + GFF6909 0.40 +0.1
44,143 + GFF6909 0.40 +0.2
44,144 - GFF6909 0.40 +0.1
44,144 - GFF6909 0.40 +0.0
44,144 - GFF6909 0.40 +0.1
44,144 - GFF6909 0.40 -0.1
44,144 - GFF6909 0.40 -1.5
44,144 - GFF6909 0.40 -0.8
44,144 - GFF6909 0.40 -0.5
44,144 - GFF6909 0.40 -0.9
44,144 - GFF6909 0.40 -0.0
44,144 - GFF6909 0.40 +0.1
44,662 + GFF6909 0.77 -0.2
44,662 + GFF6909 0.77 +0.1
44,662 + GFF6909 0.77 -0.6
44,662 + GFF6909 0.77 -0.4
44,662 + GFF6909 0.77 -1.5
44,662 + GFF6909 0.77 -1.1
44,663 - GFF6909 0.77 +0.7
44,663 - GFF6909 0.77 -1.5
44,663 - GFF6909 0.77 -0.9
44,663 - GFF6909 0.77 +0.2
44,663 - GFF6909 0.77 -1.3
44,663 - GFF6909 0.77 -0.0
44,663 - GFF6909 0.77 -0.0
44,734 + GFF6909 0.82 +0.3
44,735 - GFF6909 0.82 -1.6
44,735 - GFF6909 0.82 -1.3
44,735 - GFF6909 0.82 -0.4
44,735 - GFF6909 0.82 +0.5
44,735 - GFF6909 0.82 -0.5
44,735 - GFF6909 0.82 +0.2
45,194 + GFF6910 0.11 +0.1
45,195 - GFF6910 0.11 +0.1
45,195 - GFF6910 0.11 -1.4
45,434 + GFF6910 0.29 -0.5
45,435 - GFF6910 0.29 +0.5
45,435 - GFF6910 0.29 -1.3
45,435 - GFF6910 0.29 +1.1
45,435 - GFF6910 0.29 -0.9
45,435 - GFF6910 0.29 -0.4
45,935 + GFF6910 0.66 -0.4
45,935 + GFF6910 0.66 +0.2
45,935 + GFF6910 0.66 -1.3
45,935 + GFF6910 0.66 -0.3
45,935 + GFF6910 0.66 +0.7
45,935 + GFF6910 0.66 -0.2
45,936 - GFF6910 0.66 -0.3
45,936 - GFF6910 0.66 -0.2
45,999 - GFF6910 0.71 -0.1
45,999 - GFF6910 0.71 -2.0
46,037 + GFF6910 0.74 +1.1
46,037 + GFF6910 0.74 -0.4
46,037 + GFF6910 0.74 -0.8
46,037 + GFF6910 0.74 -0.9
46,037 + GFF6910 0.74 -0.1
46,038 - GFF6910 0.74 -1.5
46,351 + -1.2
46,351 + -1.1
46,351 + +0.2
46,351 + +0.5
46,351 + +1.1
46,352 - -0.7
46,352 - +0.2
46,352 - +0.6
46,352 - -0.2
46,352 - -0.3
46,352 - -0.5
46,353 - +0.1
46,468 + +0.3
46,468 + -0.4
46,469 - -0.3
46,469 - -1.0
46,469 - +0.0
46,469 - -0.1
46,469 - +2.9
46,469 - -0.6
46,469 - +1.1
46,469 - -0.7
46,469 - -0.5
46,469 - +0.5
46,469 - -1.5
46,469 - -0.1
46,469 - +0.0
46,496 + -0.1
46,691 + GFF6911 0.15 +0.1
46,961 + GFF6911 0.41 -1.0
46,961 + GFF6911 0.41 -0.1
46,961 + GFF6911 0.41 +0.1
46,961 + GFF6911 0.41 -0.9
46,962 - GFF6911 0.41 -1.5
46,962 - GFF6911 0.41 +0.1
46,962 - GFF6911 0.41 -0.5
46,962 - GFF6911 0.41 +1.3
47,042 + GFF6911 0.48 +0.3
47,042 + GFF6911 0.48 -0.9
47,042 + GFF6911 0.48 +0.1
47,042 + GFF6911 0.48 -0.6
47,043 - GFF6911 0.49 -0.8
47,043 - GFF6911 0.49 -0.8
47,043 - GFF6911 0.49 -0.8
47,043 - GFF6911 0.49 +0.3
47,043 - GFF6911 0.49 -0.4
47,043 - GFF6911 0.49 +0.3
47,043 - GFF6911 0.49 +0.2
47,150 + GFF6911 0.59 +0.1
47,150 + GFF6911 0.59 -0.4
47,150 + GFF6911 0.59 +0.3
47,150 + GFF6911 0.59 -0.6
47,150 + GFF6911 0.59 +0.6
47,150 + GFF6911 0.59 +0.7
47,150 + GFF6911 0.59 -0.1
47,150 + GFF6911 0.59 +1.1
47,150 + GFF6911 0.59 -1.9
47,150 + GFF6911 0.59 +0.2
47,151 - GFF6911 0.59 -1.4
47,171 + GFF6911 0.61 -0.6
47,171 + GFF6911 0.61 +0.5
47,171 + GFF6911 0.61 -1.0
47,171 + GFF6911 0.61 -1.8
47,171 + GFF6911 0.61 -0.4
47,172 - GFF6911 0.61 +0.6

Or see this region's nucleotide sequence