Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF678 and GFF679 overlap by 8 nucleotides GFF679 and GFF680 overlap by 32 nucleotides GFF680 and GFF681 are separated by 174 nucleotides
GFF678 - Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7), at 730,047 to 733,400
GFF678
GFF679 - DNA polymerase-like protein PA0670, at 733,393 to 734,748
GFF679
GFF680 - RecA/RadA recombinase, at 734,717 to 735,523
GFF680
GFF681 - Hypothetical protein in cluster with At3g50560-like gene family, at 735,698 to 736,537
GFF681
Position (kb) 733
734
735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 732.454 kb on + strand, within GFF678 at 732.454 kb on + strand, within GFF678 at 732.454 kb on + strand, within GFF678 at 732.454 kb on + strand, within GFF678 at 732.454 kb on + strand, within GFF678 at 732.454 kb on + strand, within GFF678 at 732.454 kb on + strand, within GFF678 at 732.455 kb on - strand, within GFF678 at 732.455 kb on - strand, within GFF678 at 732.455 kb on - strand, within GFF678 at 732.455 kb on - strand, within GFF678 at 732.455 kb on - strand, within GFF678 at 732.455 kb on - strand, within GFF678 at 732.455 kb on - strand, within GFF678 at 732.455 kb on - strand, within GFF678 at 732.455 kb on - strand, within GFF678 at 732.455 kb on - strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.671 kb on + strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.672 kb on - strand, within GFF678 at 732.796 kb on + strand, within GFF678 at 732.932 kb on - strand, within GFF678 at 733.207 kb on + strand at 733.208 kb on - strand at 733.208 kb on - strand at 733.219 kb on + strand at 733.219 kb on + strand at 733.219 kb on + strand at 733.219 kb on + strand at 733.297 kb on + strand at 733.298 kb on - strand at 733.298 kb on - strand at 733.400 kb on + strand at 733.400 kb on + strand at 733.400 kb on + strand at 733.400 kb on + strand at 733.400 kb on + strand at 733.400 kb on + strand at 733.400 kb on + strand at 733.400 kb on + strand at 733.400 kb on + strand at 733.401 kb on - strand at 733.401 kb on - strand at 733.401 kb on - strand at 733.415 kb on + strand at 733.415 kb on + strand at 733.415 kb on + strand at 733.416 kb on - strand at 733.416 kb on - strand at 733.465 kb on + strand at 733.465 kb on + strand at 733.466 kb on - strand at 733.502 kb on + strand at 733.502 kb on + strand at 733.502 kb on + strand at 733.503 kb on - strand at 733.503 kb on - strand at 733.503 kb on - strand at 733.503 kb on - strand at 733.503 kb on - strand at 733.503 kb on - strand at 733.503 kb on - strand at 733.505 kb on + strand at 733.505 kb on + strand at 733.506 kb on - strand at 733.506 kb on - strand at 733.506 kb on - strand at 733.601 kb on + strand, within GFF679 at 733.601 kb on + strand, within GFF679 at 733.662 kb on - strand, within GFF679 at 733.662 kb on - strand, within GFF679 at 733.662 kb on - strand, within GFF679 at 733.665 kb on + strand, within GFF679 at 734.646 kb on - strand at 734.723 kb on - strand at 734.723 kb on - strand at 734.723 kb on - strand at 734.723 kb on - strand at 734.723 kb on - strand at 734.723 kb on - strand at 735.255 kb on + strand, within GFF680 at 735.256 kb on - strand, within GFF680 at 735.537 kb on - strand at 735.537 kb on - strand at 735.537 kb on - strand at 735.542 kb on + strand at 735.550 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.556 kb on - strand at 735.608 kb on + strand at 735.681 kb on + strand at 735.681 kb on + strand at 735.681 kb on + strand at 735.682 kb on - strand at 735.737 kb on + strand at 735.737 kb on + strand at 735.737 kb on + strand at 735.737 kb on + strand at 735.738 kb on - strand at 735.738 kb on - strand at 735.738 kb on - strand at 735.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 732,454 + GFF678 0.72 -0.7 732,454 + GFF678 0.72 -0.0 732,454 + GFF678 0.72 +0.8 732,454 + GFF678 0.72 +0.2 732,454 + GFF678 0.72 +0.2 732,454 + GFF678 0.72 +0.2 732,454 + GFF678 0.72 -0.8 732,455 - GFF678 0.72 +0.1 732,455 - GFF678 0.72 -0.1 732,455 - GFF678 0.72 -1.7 732,455 - GFF678 0.72 -0.8 732,455 - GFF678 0.72 -0.7 732,455 - GFF678 0.72 +1.2 732,455 - GFF678 0.72 -0.4 732,455 - GFF678 0.72 -0.0 732,455 - GFF678 0.72 -0.7 732,455 - GFF678 0.72 +0.0 732,671 + GFF678 0.78 -0.8 732,671 + GFF678 0.78 -0.8 732,671 + GFF678 0.78 +0.7 732,671 + GFF678 0.78 +1.0 732,671 + GFF678 0.78 -0.7 732,671 + GFF678 0.78 -0.4 732,671 + GFF678 0.78 -1.5 732,671 + GFF678 0.78 -0.4 732,671 + GFF678 0.78 -0.7 732,671 + GFF678 0.78 -0.5 732,671 + GFF678 0.78 +0.2 732,671 + GFF678 0.78 +0.5 732,672 - GFF678 0.78 +0.4 732,672 - GFF678 0.78 -0.4 732,672 - GFF678 0.78 -0.5 732,672 - GFF678 0.78 -1.1 732,672 - GFF678 0.78 +0.5 732,672 - GFF678 0.78 -0.9 732,672 - GFF678 0.78 +1.8 732,672 - GFF678 0.78 +0.2 732,672 - GFF678 0.78 -1.5 732,672 - GFF678 0.78 -0.3 732,672 - GFF678 0.78 +1.3 732,672 - GFF678 0.78 -2.8 732,796 + GFF678 0.82 -0.3 732,932 - GFF678 0.86 -1.3 733,207 + -1.2 733,208 - +0.1 733,208 - +0.2 733,219 + -0.2 733,219 + +0.4 733,219 + -0.4 733,219 + -0.2 733,297 + +0.6 733,298 - -0.1 733,298 - -1.2 733,400 + +0.2 733,400 + -0.0 733,400 + +0.1 733,400 + +1.4 733,400 + +0.0 733,400 + -0.5 733,400 + -0.8 733,400 + +0.9 733,400 + +0.2 733,401 - +0.5 733,401 - -0.2 733,401 - -0.3 733,415 + +0.8 733,415 + +0.3 733,415 + +0.3 733,416 - +2.4 733,416 - -0.4 733,465 + +1.4 733,465 + +1.3 733,466 - +0.6 733,502 + -1.4 733,502 + -0.5 733,502 + -0.0 733,503 - -1.1 733,503 - -0.1 733,503 - -0.3 733,503 - -0.4 733,503 - -1.0 733,503 - -0.6 733,503 - +0.8 733,505 + -0.3 733,505 + -0.2 733,506 - -0.9 733,506 - +1.8 733,506 - -0.8 733,601 + GFF679 0.15 -0.4 733,601 + GFF679 0.15 -0.7 733,662 - GFF679 0.20 -1.0 733,662 - GFF679 0.20 -0.6 733,662 - GFF679 0.20 -0.2 733,665 + GFF679 0.20 -0.8 734,646 - -0.4 734,723 - +0.2 734,723 - -0.4 734,723 - +1.1 734,723 - -0.3 734,723 - -0.1 734,723 - -0.9 735,255 + GFF680 0.67 +1.0 735,256 - GFF680 0.67 -0.1 735,537 - -0.3 735,537 - +0.1 735,537 - +0.5 735,542 + +0.2 735,550 + +2.8 735,555 + -0.7 735,555 + -0.1 735,555 + +0.2 735,555 + -0.0 735,555 + +0.6 735,555 + +0.6 735,556 - -0.3 735,608 + -1.0 735,681 + -0.8 735,681 + +0.2 735,681 + +0.3 735,682 - -0.5 735,737 + +1.1 735,737 + -0.6 735,737 + +0.6 735,737 + +1.0 735,738 - -0.7 735,738 - -0.2 735,738 - +0.2 735,738 - -0.5
Or see this region's nucleotide sequence