Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6784 and GFF6785 are separated by 24 nucleotides GFF6785 and GFF6786 are separated by 35 nucleotides GFF6786 and GFF6787 are separated by 13 nucleotides GFF6787 and GFF6788 are separated by 29 nucleotides
GFF6784 - D-amino acid dehydrogenase (EC 1.4.99.6), at 34,016 to 35,311
GFF6784
GFF6785 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 35,336 to 35,626
GFF6785
GFF6786 - CopG protein, at 35,662 to 36,123
GFF6786
GFF6787 - Copper tolerance protein, at 36,137 to 36,661
GFF6787
GFF6788 - Multicopper oxidase, at 36,691 to 38,082
GFF6788
Position (kb) 36
37 Strain fitness (log2 ratio) -2
-1
0
1 at 35.310 kb on - strand at 35.643 kb on + strand at 35.643 kb on + strand at 35.643 kb on + strand at 35.644 kb on - strand at 35.644 kb on - strand at 35.720 kb on + strand, within GFF6786 at 35.721 kb on - strand, within GFF6786 at 35.741 kb on + strand, within GFF6786 at 35.742 kb on - strand, within GFF6786 at 35.865 kb on - strand, within GFF6786 at 36.198 kb on + strand, within GFF6787 at 36.198 kb on + strand, within GFF6787 at 36.439 kb on - strand, within GFF6787 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.025 kb on + strand, within GFF6788 at 37.026 kb on - strand, within GFF6788 at 37.026 kb on - strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.620 kb on - strand, within GFF6788
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,310 - +0.3 35,643 + -0.4 35,643 + -0.6 35,643 + +0.1 35,644 - -0.9 35,644 - -0.3 35,720 + GFF6786 0.13 +0.1 35,721 - GFF6786 0.13 +0.7 35,741 + GFF6786 0.17 -1.3 35,742 - GFF6786 0.17 -1.0 35,865 - GFF6786 0.44 -0.2 36,198 + GFF6787 0.12 -1.1 36,198 + GFF6787 0.12 -0.4 36,439 - GFF6787 0.58 -0.7 37,025 + GFF6788 0.24 -0.4 37,025 + GFF6788 0.24 -1.5 37,025 + GFF6788 0.24 +0.1 37,025 + GFF6788 0.24 -0.5 37,025 + GFF6788 0.24 -0.5 37,025 + GFF6788 0.24 +0.3 37,025 + GFF6788 0.24 -1.2 37,025 + GFF6788 0.24 -1.3 37,026 - GFF6788 0.24 -0.1 37,026 - GFF6788 0.24 -0.2 37,583 + GFF6788 0.64 -0.6 37,583 + GFF6788 0.64 -0.3 37,583 + GFF6788 0.64 -0.7 37,583 + GFF6788 0.64 +1.1 37,583 + GFF6788 0.64 -0.1 37,583 + GFF6788 0.64 -0.3 37,583 + GFF6788 0.64 -0.1 37,583 + GFF6788 0.64 +0.9 37,583 + GFF6788 0.64 -2.1 37,583 + GFF6788 0.64 +0.8 37,584 - GFF6788 0.64 +1.7 37,584 - GFF6788 0.64 +0.1 37,584 - GFF6788 0.64 -1.1 37,584 - GFF6788 0.64 -0.7 37,584 - GFF6788 0.64 +0.3 37,584 - GFF6788 0.64 +1.1 37,584 - GFF6788 0.64 +0.1 37,620 - GFF6788 0.67 -1.4
Or see this region's nucleotide sequence