Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6770 and GFF6771 overlap by 4 nucleotides GFF6771 and GFF6772 are separated by 0 nucleotides GFF6772 and GFF6773 are separated by 150 nucleotides
GFF6770 - 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21), at 16,198 to 16,842
GFF6770
GFF6771 - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58), at 16,839 to 17,750
GFF6771
GFF6772 - L-arabonate dehydratase (EC 4.2.1.25), at 17,751 to 19,487
GFF6772
GFF6773 - Transcriptional regulator, GntR family, at 19,638 to 20,381
GFF6773
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.056 kb on + strand, within GFF6771 at 17.056 kb on + strand, within GFF6771 at 17.056 kb on + strand, within GFF6771 at 17.056 kb on + strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.239 kb on + strand, within GFF6771 at 17.239 kb on + strand, within GFF6771 at 17.239 kb on + strand, within GFF6771 at 17.240 kb on - strand, within GFF6771 at 17.240 kb on - strand, within GFF6771 at 17.257 kb on + strand, within GFF6771 at 17.257 kb on + strand, within GFF6771 at 17.257 kb on + strand, within GFF6771 at 17.257 kb on + strand, within GFF6771 at 17.258 kb on - strand, within GFF6771 at 17.258 kb on - strand, within GFF6771 at 17.258 kb on - strand, within GFF6771 at 17.258 kb on - strand, within GFF6771 at 17.736 kb on + strand at 17.752 kb on + strand at 17.752 kb on + strand at 17.752 kb on + strand at 17.752 kb on + strand at 17.753 kb on - strand at 17.753 kb on - strand at 17.753 kb on - strand at 17.753 kb on - strand at 17.842 kb on + strand at 17.842 kb on + strand at 17.843 kb on - strand at 17.855 kb on - strand at 18.040 kb on + strand, within GFF6772 at 18.041 kb on - strand, within GFF6772 at 18.400 kb on + strand, within GFF6772 at 18.400 kb on + strand, within GFF6772 at 18.512 kb on - strand, within GFF6772 at 18.532 kb on + strand, within GFF6772 at 18.532 kb on + strand, within GFF6772 at 18.533 kb on - strand, within GFF6772 at 18.533 kb on - strand, within GFF6772 at 19.184 kb on - strand, within GFF6772 at 19.261 kb on + strand, within GFF6772 at 19.405 kb on + strand at 19.405 kb on + strand at 19.406 kb on - strand at 19.406 kb on - strand at 19.406 kb on - strand at 19.502 kb on + strand at 19.502 kb on + strand at 19.503 kb on - strand at 19.503 kb on - strand at 19.503 kb on - strand at 19.566 kb on + strand at 19.566 kb on + strand at 19.566 kb on + strand at 19.566 kb on + strand at 19.567 kb on - strand at 19.701 kb on + strand at 19.702 kb on - strand at 20.022 kb on + strand, within GFF6773 at 20.061 kb on + strand, within GFF6773 at 20.061 kb on + strand, within GFF6773 at 20.269 kb on + strand, within GFF6773 at 20.269 kb on + strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.380 kb on - strand at 20.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,056 + GFF6771 0.24 -0.5 17,056 + GFF6771 0.24 -0.9 17,056 + GFF6771 0.24 +0.3 17,056 + GFF6771 0.24 +0.7 17,057 - GFF6771 0.24 +0.1 17,057 - GFF6771 0.24 -0.1 17,057 - GFF6771 0.24 -0.4 17,057 - GFF6771 0.24 +0.4 17,057 - GFF6771 0.24 +0.9 17,057 - GFF6771 0.24 +0.3 17,239 + GFF6771 0.44 -0.3 17,239 + GFF6771 0.44 +0.1 17,239 + GFF6771 0.44 +0.9 17,240 - GFF6771 0.44 +0.2 17,240 - GFF6771 0.44 +0.7 17,257 + GFF6771 0.46 -1.3 17,257 + GFF6771 0.46 +0.3 17,257 + GFF6771 0.46 +0.3 17,257 + GFF6771 0.46 +1.7 17,258 - GFF6771 0.46 +0.0 17,258 - GFF6771 0.46 +0.1 17,258 - GFF6771 0.46 -0.1 17,258 - GFF6771 0.46 -1.6 17,736 + -0.0 17,752 + -0.6 17,752 + +0.1 17,752 + -0.1 17,752 + +0.7 17,753 - +0.1 17,753 - -0.2 17,753 - -0.3 17,753 - +0.4 17,842 + +0.1 17,842 + -0.9 17,843 - +1.4 17,855 - -2.0 18,040 + GFF6772 0.17 -0.3 18,041 - GFF6772 0.17 -0.8 18,400 + GFF6772 0.37 -0.3 18,400 + GFF6772 0.37 +1.0 18,512 - GFF6772 0.44 +0.1 18,532 + GFF6772 0.45 -1.4 18,532 + GFF6772 0.45 -0.7 18,533 - GFF6772 0.45 -2.1 18,533 - GFF6772 0.45 -1.1 19,184 - GFF6772 0.82 -0.5 19,261 + GFF6772 0.87 +0.3 19,405 + +0.7 19,405 + +1.4 19,406 - -0.7 19,406 - -1.4 19,406 - +0.2 19,502 + -0.6 19,502 + -2.0 19,503 - -0.6 19,503 - -0.3 19,503 - -0.1 19,566 + -0.4 19,566 + -0.7 19,566 + -0.8 19,566 + -1.1 19,567 - -0.5 19,701 + +0.3 19,702 - +0.5 20,022 + GFF6773 0.52 -1.0 20,061 + GFF6773 0.57 -1.1 20,061 + GFF6773 0.57 +0.2 20,269 + GFF6773 0.85 +2.1 20,269 + GFF6773 0.85 +0.7 20,270 - GFF6773 0.85 -1.0 20,270 - GFF6773 0.85 +0.1 20,270 - GFF6773 0.85 +0.4 20,270 - GFF6773 0.85 -0.7 20,380 - +0.8 20,380 - +0.4
Or see this region's nucleotide sequence