Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6717 and GFF6718 are separated by 106 nucleotides GFF6718 and GFF6719 are separated by 7 nucleotides GFF6719 and GFF6720 are separated by 15 nucleotides
GFF6717 - hypothetical protein, at 26,152 to 28,392
GFF6717
GFF6718 - no description, at 28,499 to 28,918
GFF6718
GFF6719 - hypothetical protein, at 28,926 to 29,489
GFF6719
GFF6720 - no description, at 29,505 to 30,554
GFF6720
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.015 kb on + strand, within GFF6717 at 28.015 kb on + strand, within GFF6717 at 28.016 kb on - strand, within GFF6717 at 28.047 kb on + strand, within GFF6717 at 28.047 kb on + strand, within GFF6717 at 28.102 kb on + strand, within GFF6717 at 28.103 kb on - strand, within GFF6717 at 28.118 kb on + strand, within GFF6717 at 28.153 kb on + strand, within GFF6717 at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.179 kb on + strand at 28.179 kb on + strand at 28.179 kb on + strand at 28.180 kb on - strand at 28.288 kb on + strand at 28.315 kb on + strand at 28.315 kb on + strand at 28.316 kb on - strand at 28.316 kb on - strand at 28.575 kb on - strand, within GFF6718 at 28.609 kb on + strand, within GFF6718 at 28.839 kb on - strand, within GFF6718 at 29.070 kb on - strand, within GFF6719 at 29.079 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.220 kb on + strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.334 kb on + strand, within GFF6719 at 29.335 kb on - strand, within GFF6719 at 29.335 kb on - strand, within GFF6719 at 29.369 kb on + strand, within GFF6719 at 29.370 kb on - strand, within GFF6719 at 29.700 kb on + strand, within GFF6720 at 29.701 kb on - strand, within GFF6720 at 29.703 kb on + strand, within GFF6720 at 29.919 kb on + strand, within GFF6720 at 29.919 kb on + strand, within GFF6720 at 29.920 kb on - strand, within GFF6720 at 29.920 kb on - strand, within GFF6720 at 29.920 kb on - strand, within GFF6720 at 30.021 kb on + strand, within GFF6720 at 30.021 kb on + strand, within GFF6720 at 30.021 kb on + strand, within GFF6720 at 30.022 kb on - strand, within GFF6720 at 30.175 kb on - strand, within GFF6720 at 30.175 kb on - strand, within GFF6720 at 30.175 kb on - strand, within GFF6720 at 30.175 kb on - strand, within GFF6720 at 30.175 kb on - strand, within GFF6720 at 30.302 kb on - strand, within GFF6720 at 30.302 kb on - strand, within GFF6720
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 28,015 + GFF6717 0.83 +0.3 28,015 + GFF6717 0.83 -0.7 28,016 - GFF6717 0.83 -0.3 28,047 + GFF6717 0.85 -0.4 28,047 + GFF6717 0.85 -0.4 28,102 + GFF6717 0.87 -1.1 28,103 - GFF6717 0.87 -0.8 28,118 + GFF6717 0.88 +0.6 28,153 + GFF6717 0.89 -0.3 28,177 + +1.9 28,177 + -0.2 28,177 + -0.8 28,177 + -1.1 28,177 + +0.9 28,177 + -2.0 28,177 + -0.5 28,178 - -0.9 28,178 - +0.0 28,178 - -0.0 28,178 - -1.1 28,178 - +0.2 28,178 - +0.1 28,178 - +0.2 28,178 - +0.2 28,178 - -0.7 28,178 - -0.6 28,179 + +0.0 28,179 + +0.0 28,179 + -0.8 28,180 - +0.0 28,288 + +0.0 28,315 + -0.4 28,315 + -0.8 28,316 - -0.4 28,316 - +1.9 28,575 - GFF6718 0.18 -1.5 28,609 + GFF6718 0.26 +0.0 28,839 - GFF6718 0.81 -0.2 29,070 - GFF6719 0.26 -1.0 29,079 + GFF6719 0.27 -0.1 29,169 + GFF6719 0.43 -0.5 29,169 + GFF6719 0.43 -0.8 29,169 + GFF6719 0.43 -0.8 29,169 + GFF6719 0.43 -0.8 29,169 + GFF6719 0.43 -0.1 29,170 - GFF6719 0.43 -0.3 29,170 - GFF6719 0.43 +0.7 29,170 - GFF6719 0.43 -1.1 29,170 - GFF6719 0.43 -0.5 29,170 - GFF6719 0.43 -0.5 29,170 - GFF6719 0.43 -0.4 29,170 - GFF6719 0.43 -0.1 29,170 - GFF6719 0.43 +1.1 29,220 + GFF6719 0.52 +0.3 29,221 - GFF6719 0.52 +0.3 29,221 - GFF6719 0.52 -0.3 29,221 - GFF6719 0.52 +0.1 29,221 - GFF6719 0.52 -0.1 29,221 - GFF6719 0.52 -0.7 29,334 + GFF6719 0.72 -1.6 29,335 - GFF6719 0.73 -2.3 29,335 - GFF6719 0.73 -0.1 29,369 + GFF6719 0.79 +0.4 29,370 - GFF6719 0.79 -1.0 29,700 + GFF6720 0.19 +0.3 29,701 - GFF6720 0.19 +1.2 29,703 + GFF6720 0.19 -1.8 29,919 + GFF6720 0.39 -2.1 29,919 + GFF6720 0.39 -0.9 29,920 - GFF6720 0.40 +0.0 29,920 - GFF6720 0.40 -1.1 29,920 - GFF6720 0.40 +0.3 30,021 + GFF6720 0.49 -1.8 30,021 + GFF6720 0.49 +0.2 30,021 + GFF6720 0.49 -1.8 30,022 - GFF6720 0.49 +0.2 30,175 - GFF6720 0.64 -0.9 30,175 - GFF6720 0.64 +0.2 30,175 - GFF6720 0.64 -0.2 30,175 - GFF6720 0.64 -1.2 30,175 - GFF6720 0.64 +0.5 30,302 - GFF6720 0.76 -1.1 30,302 - GFF6720 0.76 -0.6
Or see this region's nucleotide sequence