Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6702 and GFF6703 overlap by 8 nucleotides GFF6703 and GFF6704 are separated by 4 nucleotides GFF6704 and GFF6705 are separated by 343 nucleotides
GFF6702 - Lipoprotein releasing system transmembrane protein LolC/LolE, at 11,005 to 12,261
GFF6702
GFF6703 - Lipoprotein-releasing system ATP-binding protein LolD, at 12,254 to 12,931
GFF6703
GFF6704 - no description, at 12,936 to 13,151
GFF6704
GFF6705 - hypothetical protein, at 13,495 to 14,268
GFF6705
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 12.268 kb on - strand at 12.268 kb on - strand at 12.268 kb on - strand at 12.268 kb on - strand at 13.022 kb on + strand, within GFF6704 at 13.023 kb on - strand, within GFF6704 at 13.023 kb on - strand, within GFF6704 at 13.120 kb on + strand, within GFF6704 at 13.120 kb on + strand, within GFF6704 at 13.276 kb on + strand at 13.276 kb on + strand at 13.276 kb on + strand at 13.276 kb on + strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.520 kb on + strand at 13.520 kb on + strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.694 kb on - strand, within GFF6705 at 13.694 kb on - strand, within GFF6705 at 13.728 kb on - strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.943 kb on - strand, within GFF6705 at 13.943 kb on - strand, within GFF6705 at 14.050 kb on - strand, within GFF6705
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 12,268 - -0.7 12,268 - +0.5 12,268 - +1.4 12,268 - -0.6 13,022 + GFF6704 0.40 +0.3 13,023 - GFF6704 0.40 +0.5 13,023 - GFF6704 0.40 +0.9 13,120 + GFF6704 0.85 -1.1 13,120 + GFF6704 0.85 +1.6 13,276 + +0.3 13,276 + +0.3 13,276 + -0.3 13,276 + -0.1 13,277 - +0.4 13,277 - -0.3 13,277 - -1.3 13,277 - -0.4 13,277 - -0.6 13,277 - -0.1 13,520 + -0.4 13,520 + -2.1 13,521 - -0.2 13,521 - +3.4 13,521 - +0.5 13,521 - -0.4 13,693 + GFF6705 0.26 -1.0 13,693 + GFF6705 0.26 -0.1 13,693 + GFF6705 0.26 +0.9 13,693 + GFF6705 0.26 -0.5 13,693 + GFF6705 0.26 -1.2 13,694 - GFF6705 0.26 -1.0 13,694 - GFF6705 0.26 -1.1 13,728 - GFF6705 0.30 -1.0 13,874 + GFF6705 0.49 -1.5 13,874 + GFF6705 0.49 -0.5 13,874 + GFF6705 0.49 +0.9 13,943 - GFF6705 0.58 -0.1 13,943 - GFF6705 0.58 -1.6 14,050 - GFF6705 0.72 +0.7
Or see this region's nucleotide sequence