Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6677 and GFF6678 are separated by 175 nucleotides GFF6678 and GFF6679 are separated by 208 nucleotides GFF6679 and GFF6680 are separated by 62 nucleotides
GFF6677 - regulatory protein, at 52,071 to 52,982
GFF6677
GFF6678 - Putative inner membrane protein, at 53,158 to 54,381
GFF6678
GFF6679 - hypothetical protein, at 54,590 to 54,874
GFF6679
GFF6680 - Aspartate ammonia-lyase (EC 4.3.1.1), at 54,937 to 56,592
GFF6680
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.173 kb on + strand, within GFF6677 at 52.173 kb on + strand, within GFF6677 at 52.173 kb on + strand, within GFF6677 at 52.173 kb on + strand, within GFF6677 at 52.174 kb on - strand, within GFF6677 at 52.174 kb on - strand, within GFF6677 at 52.174 kb on - strand, within GFF6677 at 52.174 kb on - strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.280 kb on - strand, within GFF6677 at 52.280 kb on - strand, within GFF6677 at 52.280 kb on - strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.519 kb on + strand, within GFF6677 at 52.520 kb on - strand, within GFF6677 at 52.549 kb on + strand, within GFF6677 at 52.549 kb on + strand, within GFF6677 at 52.550 kb on - strand, within GFF6677 at 52.550 kb on - strand, within GFF6677 at 52.550 kb on - strand, within GFF6677 at 52.570 kb on + strand, within GFF6677 at 52.570 kb on + strand, within GFF6677 at 52.570 kb on + strand, within GFF6677 at 52.571 kb on - strand, within GFF6677 at 52.571 kb on - strand, within GFF6677 at 52.571 kb on - strand, within GFF6677 at 52.571 kb on - strand, within GFF6677 at 52.576 kb on + strand, within GFF6677 at 52.577 kb on - strand, within GFF6677 at 52.577 kb on - strand, within GFF6677 at 52.609 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.631 kb on - strand, within GFF6677 at 52.631 kb on - strand, within GFF6677 at 52.631 kb on - strand, within GFF6677 at 52.631 kb on - strand, within GFF6677 at 52.930 kb on + strand at 52.931 kb on - strand at 52.948 kb on + strand at 52.948 kb on + strand at 52.949 kb on - strand at 52.949 kb on - strand at 52.949 kb on - strand at 52.949 kb on - strand at 52.949 kb on - strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.958 kb on - strand at 52.958 kb on - strand at 53.245 kb on + strand at 53.245 kb on + strand at 53.245 kb on + strand at 53.246 kb on - strand at 53.246 kb on - strand at 53.246 kb on - strand at 53.246 kb on - strand at 53.246 kb on - strand at 53.246 kb on - strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.369 kb on + strand, within GFF6678 at 53.370 kb on - strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.495 kb on - strand, within GFF6678 at 53.495 kb on - strand, within GFF6678 at 53.495 kb on - strand, within GFF6678 at 53.495 kb on - strand, within GFF6678 at 53.555 kb on - strand, within GFF6678 at 53.555 kb on - strand, within GFF6678 at 53.632 kb on + strand, within GFF6678 at 53.632 kb on + strand, within GFF6678 at 53.632 kb on + strand, within GFF6678 at 53.632 kb on + strand, within GFF6678 at 53.633 kb on - strand, within GFF6678 at 53.633 kb on - strand, within GFF6678 at 53.633 kb on - strand, within GFF6678 at 53.633 kb on - strand, within GFF6678 at 53.641 kb on + strand, within GFF6678 at 53.642 kb on - strand, within GFF6678 at 53.642 kb on - strand, within GFF6678 at 53.653 kb on + strand, within GFF6678 at 53.653 kb on + strand, within GFF6678 at 53.851 kb on + strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.870 kb on - strand, within GFF6678 at 53.870 kb on - strand, within GFF6678 at 53.870 kb on - strand, within GFF6678 at 53.875 kb on + strand, within GFF6678 at 53.875 kb on + strand, within GFF6678 at 53.876 kb on - strand, within GFF6678 at 54.034 kb on + strand, within GFF6678 at 54.034 kb on + strand, within GFF6678 at 54.034 kb on + strand, within GFF6678 at 54.034 kb on + strand, within GFF6678 at 54.034 kb on + strand, within GFF6678 at 54.034 kb on + strand, within GFF6678 at 54.034 kb on + strand, within GFF6678 at 54.035 kb on - strand, within GFF6678 at 54.035 kb on - strand, within GFF6678 at 54.035 kb on - strand, within GFF6678 at 54.035 kb on - strand, within GFF6678 at 54.035 kb on - strand, within GFF6678 at 54.067 kb on + strand, within GFF6678 at 54.079 kb on + strand, within GFF6678 at 54.079 kb on + strand, within GFF6678 at 54.079 kb on + strand, within GFF6678 at 54.079 kb on + strand, within GFF6678 at 54.079 kb on + strand, within GFF6678 at 54.079 kb on + strand, within GFF6678 at 54.079 kb on + strand, within GFF6678 at 54.080 kb on - strand, within GFF6678 at 54.080 kb on - strand, within GFF6678 at 54.080 kb on - strand, within GFF6678 at 54.127 kb on + strand, within GFF6678 at 54.128 kb on - strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.136 kb on + strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.137 kb on - strand, within GFF6678 at 54.405 kb on + strand at 54.405 kb on + strand at 54.405 kb on + strand at 54.405 kb on + strand at 54.405 kb on + strand at 54.405 kb on + strand at 54.405 kb on + strand at 54.406 kb on - strand at 54.406 kb on - strand at 54.406 kb on - strand at 54.406 kb on - strand at 54.406 kb on - strand at 54.606 kb on + strand at 54.607 kb on - strand at 54.755 kb on + strand, within GFF6679 at 54.776 kb on + strand, within GFF6679 at 54.776 kb on + strand, within GFF6679 at 54.776 kb on + strand, within GFF6679 at 54.776 kb on + strand, within GFF6679 at 54.776 kb on + strand, within GFF6679 at 54.777 kb on + strand, within GFF6679 at 54.872 kb on + strand at 54.873 kb on - strand at 54.897 kb on + strand at 54.897 kb on + strand at 54.897 kb on + strand at 54.898 kb on - strand at 54.898 kb on - strand at 54.898 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 52,173 + GFF6677 0.11 -0.3 52,173 + GFF6677 0.11 +0.1 52,173 + GFF6677 0.11 -0.6 52,173 + GFF6677 0.11 +1.0 52,174 - GFF6677 0.11 +1.1 52,174 - GFF6677 0.11 -0.4 52,174 - GFF6677 0.11 -0.5 52,174 - GFF6677 0.11 -0.0 52,279 + GFF6677 0.23 -0.5 52,279 + GFF6677 0.23 +0.3 52,279 + GFF6677 0.23 -0.4 52,279 + GFF6677 0.23 +0.1 52,279 + GFF6677 0.23 -0.3 52,279 + GFF6677 0.23 -0.3 52,279 + GFF6677 0.23 -0.5 52,280 - GFF6677 0.23 +0.5 52,280 - GFF6677 0.23 -0.8 52,280 - GFF6677 0.23 -1.3 52,309 + GFF6677 0.26 +2.4 52,309 + GFF6677 0.26 -0.6 52,309 + GFF6677 0.26 -0.5 52,309 + GFF6677 0.26 -0.3 52,309 + GFF6677 0.26 -0.3 52,309 + GFF6677 0.26 +0.4 52,309 + GFF6677 0.26 -0.1 52,309 + GFF6677 0.26 +0.2 52,309 + GFF6677 0.26 -0.5 52,309 + GFF6677 0.26 +0.2 52,309 + GFF6677 0.26 +0.0 52,310 - GFF6677 0.26 -0.9 52,310 - GFF6677 0.26 -0.9 52,310 - GFF6677 0.26 -0.5 52,310 - GFF6677 0.26 -0.0 52,310 - GFF6677 0.26 -0.3 52,310 - GFF6677 0.26 -1.4 52,519 + GFF6677 0.49 -0.2 52,520 - GFF6677 0.49 -0.3 52,549 + GFF6677 0.52 +0.4 52,549 + GFF6677 0.52 -0.7 52,550 - GFF6677 0.53 +1.0 52,550 - GFF6677 0.53 -1.1 52,550 - GFF6677 0.53 -1.1 52,570 + GFF6677 0.55 -0.8 52,570 + GFF6677 0.55 +0.0 52,570 + GFF6677 0.55 -0.7 52,571 - GFF6677 0.55 -2.4 52,571 - GFF6677 0.55 +0.5 52,571 - GFF6677 0.55 -0.4 52,571 - GFF6677 0.55 -1.6 52,576 + GFF6677 0.55 +0.1 52,577 - GFF6677 0.55 -0.0 52,577 - GFF6677 0.55 -0.9 52,609 + GFF6677 0.59 +1.7 52,630 + GFF6677 0.61 -0.1 52,630 + GFF6677 0.61 +0.5 52,630 + GFF6677 0.61 +0.0 52,630 + GFF6677 0.61 +1.0 52,630 + GFF6677 0.61 -0.5 52,630 + GFF6677 0.61 +0.8 52,630 + GFF6677 0.61 +0.4 52,631 - GFF6677 0.61 +0.1 52,631 - GFF6677 0.61 -0.0 52,631 - GFF6677 0.61 -0.3 52,631 - GFF6677 0.61 -0.3 52,930 + +0.0 52,931 - +0.1 52,948 + +0.2 52,948 + -0.6 52,949 - -0.2 52,949 - -0.0 52,949 - +1.0 52,949 - +0.5 52,949 - -0.6 52,957 + -0.3 52,957 + -0.1 52,957 + -0.2 52,957 + +0.7 52,957 + -0.5 52,957 + -1.3 52,957 + +0.9 52,957 + -0.3 52,958 - +0.2 52,958 - +1.0 53,245 + -0.8 53,245 + -1.9 53,245 + -1.2 53,246 - -0.1 53,246 - -1.1 53,246 - +0.5 53,246 - -0.2 53,246 - +0.7 53,246 - +0.0 53,260 + +0.5 53,260 + +0.3 53,260 + +0.1 53,260 + -1.5 53,260 + +0.3 53,260 + -0.6 53,260 + -0.1 53,260 + +0.5 53,260 + -0.7 53,260 + +0.4 53,260 + +0.2 53,260 + -0.9 53,260 + +0.1 53,260 + -0.5 53,260 + -0.6 53,260 + -1.1 53,260 + -0.9 53,260 + +0.3 53,260 + -0.3 53,260 + -0.8 53,260 + -0.8 53,260 + +0.7 53,260 + -0.3 53,260 + -1.3 53,261 - -0.6 53,261 - +0.9 53,261 - -0.5 53,261 - -0.5 53,261 - -1.1 53,261 - -1.0 53,261 - -0.3 53,261 - +0.4 53,261 - -1.1 53,261 - +0.0 53,261 - +0.4 53,261 - -0.0 53,261 - -0.5 53,261 - -0.4 53,261 - +0.2 53,263 + +0.3 53,263 + -0.8 53,263 + -0.4 53,263 + +0.7 53,263 + -1.0 53,263 + -0.9 53,263 + -0.2 53,263 + -0.2 53,263 + -0.4 53,263 + -0.4 53,263 + -0.4 53,263 + -0.6 53,264 - +0.0 53,264 - +0.7 53,264 - +0.8 53,264 - +1.3 53,264 - -1.1 53,264 - -0.3 53,264 - +0.1 53,264 - -0.5 53,369 + GFF6678 0.17 -1.4 53,370 - GFF6678 0.17 +0.1 53,494 + GFF6678 0.27 -0.7 53,494 + GFF6678 0.27 -0.2 53,494 + GFF6678 0.27 -0.9 53,494 + GFF6678 0.27 +0.4 53,494 + GFF6678 0.27 -0.7 53,494 + GFF6678 0.27 -1.3 53,494 + GFF6678 0.27 +0.1 53,494 + GFF6678 0.27 -1.0 53,495 - GFF6678 0.28 -0.6 53,495 - GFF6678 0.28 -0.4 53,495 - GFF6678 0.28 +0.7 53,495 - GFF6678 0.28 -0.6 53,555 - GFF6678 0.32 -0.3 53,555 - GFF6678 0.32 -0.3 53,632 + GFF6678 0.39 -0.8 53,632 + GFF6678 0.39 +0.4 53,632 + GFF6678 0.39 -0.1 53,632 + GFF6678 0.39 -0.5 53,633 - GFF6678 0.39 -0.5 53,633 - GFF6678 0.39 -0.0 53,633 - GFF6678 0.39 +0.6 53,633 - GFF6678 0.39 -0.5 53,641 + GFF6678 0.39 -0.1 53,642 - GFF6678 0.40 -0.6 53,642 - GFF6678 0.40 +1.3 53,653 + GFF6678 0.40 +0.3 53,653 + GFF6678 0.40 -0.7 53,851 + GFF6678 0.57 -0.7 53,852 - GFF6678 0.57 +0.9 53,852 - GFF6678 0.57 -0.3 53,852 - GFF6678 0.57 -0.4 53,852 - GFF6678 0.57 -1.6 53,852 - GFF6678 0.57 -1.5 53,852 - GFF6678 0.57 +0.4 53,869 + GFF6678 0.58 -0.0 53,869 + GFF6678 0.58 +0.4 53,869 + GFF6678 0.58 +0.1 53,869 + GFF6678 0.58 +0.1 53,869 + GFF6678 0.58 +0.7 53,869 + GFF6678 0.58 -1.5 53,870 - GFF6678 0.58 -1.5 53,870 - GFF6678 0.58 +0.3 53,870 - GFF6678 0.58 +0.6 53,875 + GFF6678 0.59 -0.2 53,875 + GFF6678 0.59 -0.7 53,876 - GFF6678 0.59 -0.4 54,034 + GFF6678 0.72 -0.3 54,034 + GFF6678 0.72 -2.1 54,034 + GFF6678 0.72 -0.8 54,034 + GFF6678 0.72 +0.0 54,034 + GFF6678 0.72 +0.9 54,034 + GFF6678 0.72 -0.8 54,034 + GFF6678 0.72 -0.2 54,035 - GFF6678 0.72 +0.5 54,035 - GFF6678 0.72 +0.0 54,035 - GFF6678 0.72 -0.4 54,035 - GFF6678 0.72 -1.2 54,035 - GFF6678 0.72 -1.3 54,067 + GFF6678 0.74 +0.2 54,079 + GFF6678 0.75 -0.4 54,079 + GFF6678 0.75 +0.1 54,079 + GFF6678 0.75 +0.4 54,079 + GFF6678 0.75 -0.6 54,079 + GFF6678 0.75 -0.6 54,079 + GFF6678 0.75 -1.3 54,079 + GFF6678 0.75 -1.2 54,080 - GFF6678 0.75 -0.5 54,080 - GFF6678 0.75 +0.3 54,080 - GFF6678 0.75 -0.7 54,127 + GFF6678 0.79 +0.0 54,128 - GFF6678 0.79 -0.5 54,136 + GFF6678 0.80 -1.4 54,136 + GFF6678 0.80 -0.8 54,136 + GFF6678 0.80 -1.1 54,136 + GFF6678 0.80 -1.3 54,136 + GFF6678 0.80 -0.1 54,136 + GFF6678 0.80 -0.9 54,136 + GFF6678 0.80 +0.2 54,136 + GFF6678 0.80 -0.4 54,136 + GFF6678 0.80 -0.1 54,136 + GFF6678 0.80 +0.3 54,136 + GFF6678 0.80 -0.2 54,136 + GFF6678 0.80 -0.4 54,136 + GFF6678 0.80 -1.3 54,136 + GFF6678 0.80 -0.6 54,137 - GFF6678 0.80 +0.4 54,137 - GFF6678 0.80 +0.1 54,137 - GFF6678 0.80 +0.7 54,137 - GFF6678 0.80 -1.1 54,137 - GFF6678 0.80 -0.0 54,137 - GFF6678 0.80 -0.3 54,137 - GFF6678 0.80 +0.1 54,137 - GFF6678 0.80 -0.5 54,137 - GFF6678 0.80 -0.5 54,137 - GFF6678 0.80 +0.4 54,137 - GFF6678 0.80 +0.4 54,137 - GFF6678 0.80 -0.0 54,137 - GFF6678 0.80 -0.7 54,405 + -0.5 54,405 + +0.2 54,405 + -0.9 54,405 + +1.1 54,405 + +0.0 54,405 + -1.3 54,405 + +1.0 54,406 - -0.6 54,406 - -0.1 54,406 - +0.8 54,406 - -1.0 54,406 - +0.7 54,606 + +0.8 54,607 - +1.0 54,755 + GFF6679 0.58 -0.9 54,776 + GFF6679 0.65 +0.8 54,776 + GFF6679 0.65 -0.1 54,776 + GFF6679 0.65 -0.7 54,776 + GFF6679 0.65 +0.7 54,776 + GFF6679 0.65 -0.4 54,777 + GFF6679 0.66 +1.1 54,872 + -0.0 54,873 - -0.4 54,897 + -0.5 54,897 + -0.8 54,897 + -0.2 54,898 - +2.3 54,898 - +1.5 54,898 - +0.2
Or see this region's nucleotide sequence