Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6638 and GFF6639 overlap by 1 nucleotides GFF6639 and GFF6640 are separated by 26 nucleotides GFF6640 and GFF6641 are separated by 12 nucleotides GFF6641 and GFF6642 are separated by 13 nucleotides
GFF6638 - no description, at 11,711 to 12,055
GFF6638
GFF6639 - no description, at 12,055 to 12,765
GFF6639
GFF6640 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 12,792 to 14,429
GFF6640
GFF6641 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 14,442 to 15,314
GFF6641
GFF6642 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 15,328 to 16,269
GFF6642
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.799 kb on + strand, within GFF6638 at 11.799 kb on + strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.800 kb on - strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.802 kb on + strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 11.803 kb on - strand, within GFF6638 at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.230 kb on - strand, within GFF6639 at 12.350 kb on + strand, within GFF6639 at 12.350 kb on + strand, within GFF6639 at 12.419 kb on + strand, within GFF6639 at 12.419 kb on + strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.420 kb on - strand, within GFF6639 at 12.440 kb on + strand, within GFF6639 at 12.440 kb on + strand, within GFF6639 at 12.441 kb on - strand, within GFF6639 at 12.441 kb on - strand, within GFF6639 at 12.441 kb on - strand, within GFF6639 at 12.441 kb on - strand, within GFF6639 at 12.441 kb on - strand, within GFF6639 at 12.483 kb on - strand, within GFF6639 at 12.483 kb on - strand, within GFF6639 at 12.847 kb on + strand at 12.848 kb on - strand at 12.848 kb on - strand at 12.848 kb on - strand at 12.848 kb on - strand at 13.145 kb on - strand, within GFF6640 at 13.546 kb on + strand, within GFF6640 at 13.546 kb on + strand, within GFF6640 at 13.546 kb on + strand, within GFF6640 at 13.546 kb on + strand, within GFF6640 at 13.546 kb on + strand, within GFF6640 at 13.547 kb on - strand, within GFF6640 at 13.547 kb on - strand, within GFF6640 at 13.547 kb on - strand, within GFF6640 at 13.651 kb on + strand, within GFF6640 at 13.651 kb on + strand, within GFF6640 at 13.651 kb on + strand, within GFF6640 at 13.651 kb on + strand, within GFF6640 at 13.651 kb on + strand, within GFF6640 at 13.652 kb on - strand, within GFF6640 at 13.652 kb on - strand, within GFF6640 at 13.652 kb on - strand, within GFF6640 at 13.949 kb on - strand, within GFF6640 at 13.949 kb on - strand, within GFF6640 at 14.974 kb on + strand, within GFF6641 at 14.975 kb on - strand, within GFF6641 at 15.061 kb on + strand, within GFF6641 at 15.078 kb on + strand, within GFF6641 at 15.078 kb on + strand, within GFF6641 at 15.079 kb on - strand, within GFF6641 at 15.079 kb on - strand, within GFF6641 at 15.079 kb on - strand, within GFF6641 at 15.079 kb on - strand, within GFF6641 at 15.332 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 11,799 + GFF6638 0.26 -0.5 11,799 + GFF6638 0.26 -0.3 11,800 - GFF6638 0.26 -0.7 11,800 - GFF6638 0.26 +0.9 11,800 - GFF6638 0.26 -0.7 11,800 - GFF6638 0.26 +0.9 11,800 - GFF6638 0.26 -0.3 11,800 - GFF6638 0.26 -0.3 11,800 - GFF6638 0.26 -0.3 11,800 - GFF6638 0.26 +0.1 11,800 - GFF6638 0.26 +0.5 11,802 + GFF6638 0.26 +0.1 11,802 + GFF6638 0.26 +0.8 11,802 + GFF6638 0.26 -1.1 11,802 + GFF6638 0.26 +1.4 11,802 + GFF6638 0.26 +0.3 11,802 + GFF6638 0.26 -0.3 11,802 + GFF6638 0.26 +0.9 11,802 + GFF6638 0.26 -0.0 11,802 + GFF6638 0.26 +0.0 11,802 + GFF6638 0.26 -0.3 11,802 + GFF6638 0.26 -0.6 11,802 + GFF6638 0.26 -0.5 11,802 + GFF6638 0.26 -1.3 11,802 + GFF6638 0.26 -0.3 11,802 + GFF6638 0.26 -0.4 11,802 + GFF6638 0.26 -2.0 11,802 + GFF6638 0.26 -0.0 11,802 + GFF6638 0.26 -0.3 11,803 - GFF6638 0.27 -0.5 11,803 - GFF6638 0.27 +1.0 11,803 - GFF6638 0.27 -0.5 11,803 - GFF6638 0.27 -0.5 11,803 - GFF6638 0.27 -0.9 11,803 - GFF6638 0.27 +0.4 11,803 - GFF6638 0.27 -0.3 11,803 - GFF6638 0.27 +0.9 11,803 - GFF6638 0.27 -0.2 11,803 - GFF6638 0.27 -0.6 11,803 - GFF6638 0.27 -0.5 12,033 + +0.5 12,033 + -0.3 12,033 + +0.4 12,033 + -2.2 12,033 + +1.5 12,033 + -1.9 12,033 + +0.8 12,033 + -0.4 12,033 + +0.0 12,033 + -1.6 12,033 + -0.8 12,033 + -2.1 12,033 + +0.7 12,034 - +0.3 12,034 - +0.1 12,034 - +0.5 12,034 - +0.7 12,034 - +0.7 12,034 - -0.3 12,034 - +1.2 12,034 - -0.9 12,034 - +0.1 12,034 - -0.1 12,034 - -0.0 12,034 - +2.4 12,034 - +0.1 12,034 - -1.3 12,034 - -0.6 12,034 - -0.9 12,034 - -0.3 12,230 - GFF6639 0.25 -1.0 12,350 + GFF6639 0.41 -1.0 12,350 + GFF6639 0.41 +0.1 12,419 + GFF6639 0.51 -0.4 12,419 + GFF6639 0.51 +0.3 12,420 - GFF6639 0.51 +0.3 12,420 - GFF6639 0.51 -0.5 12,420 - GFF6639 0.51 +0.2 12,420 - GFF6639 0.51 +0.8 12,420 - GFF6639 0.51 -0.1 12,420 - GFF6639 0.51 +0.2 12,420 - GFF6639 0.51 +0.4 12,440 + GFF6639 0.54 -0.1 12,440 + GFF6639 0.54 +1.3 12,441 - GFF6639 0.54 -0.5 12,441 - GFF6639 0.54 +0.2 12,441 - GFF6639 0.54 -1.3 12,441 - GFF6639 0.54 -0.1 12,441 - GFF6639 0.54 +0.2 12,483 - GFF6639 0.60 +0.1 12,483 - GFF6639 0.60 -1.3 12,847 + -0.3 12,848 - -0.6 12,848 - -0.6 12,848 - +1.4 12,848 - +0.1 13,145 - GFF6640 0.22 +2.2 13,546 + GFF6640 0.46 -1.2 13,546 + GFF6640 0.46 -0.3 13,546 + GFF6640 0.46 +0.8 13,546 + GFF6640 0.46 +0.4 13,546 + GFF6640 0.46 -0.6 13,547 - GFF6640 0.46 -0.2 13,547 - GFF6640 0.46 -0.3 13,547 - GFF6640 0.46 +0.1 13,651 + GFF6640 0.52 -0.3 13,651 + GFF6640 0.52 -0.3 13,651 + GFF6640 0.52 +1.2 13,651 + GFF6640 0.52 -0.5 13,651 + GFF6640 0.52 +0.5 13,652 - GFF6640 0.53 -0.6 13,652 - GFF6640 0.53 +1.1 13,652 - GFF6640 0.53 +1.3 13,949 - GFF6640 0.71 -0.0 13,949 - GFF6640 0.71 +0.7 14,974 + GFF6641 0.61 +0.0 14,975 - GFF6641 0.61 +0.3 15,061 + GFF6641 0.71 +1.0 15,078 + GFF6641 0.73 -1.0 15,078 + GFF6641 0.73 -0.0 15,079 - GFF6641 0.73 +0.3 15,079 - GFF6641 0.73 +0.7 15,079 - GFF6641 0.73 +0.3 15,079 - GFF6641 0.73 +0.2 15,332 + -0.7 15,359 + +0.6 15,359 + -0.2 15,359 + -1.5 15,359 + +1.7 15,359 + +0.1 15,359 + -0.2 15,359 + +0.4 15,360 - -1.6 15,360 - +1.1 15,360 - -1.5 15,360 - -0.2 15,360 - -0.2 15,360 - +0.0 15,360 - -0.5 15,360 - -0.3 15,392 + +0.7 15,392 + -1.1 15,392 + +2.7 15,392 + -1.5 15,392 + -0.3 15,392 + +0.6 15,392 + -0.3 15,392 + -0.0 15,393 - -0.3 15,393 - +1.9 15,393 - +1.7 15,393 - +0.6 15,393 - -2.4 15,393 - +1.1
Or see this region's nucleotide sequence